Query= MSMg01no538_p05.b1 MSMg01no538_p05.b1 CHROMAT_FILE:
MSMg01no538_p05.b1 PHD_FILE: MSMg01no538_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:43 2005
(679 letters)
>mm_chr13_23889153_23890232
Length = 1080
Score = 1098 bits (568), Expect = 0.0
Identities = 656/706 (92%), Gaps = 33/706 (4%)
Strand = Plus / Plus
Query: 5 gaattcccctttctctatagataataccatggcatgtgctgtagtaaaagcacaccaatt 64
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 207 gaattcctctttctctatagataataccatggcatacgctgtagtaaaagcacaccaatt 266
Query: 65 gactgtccatgtatacggtgttggactttccttttccccatctgagagtctgggtcagat 124
|||||||||||| ||||| | |||||||||||||||||||||| ||||||||||||||||
Sbjct: 267 gactgtccatgtctacggcggtggactttccttttccccatctcagagtctgggtcagat 326
Query: 125 cacttggttctagtctcaaggctgaggtacctggcttgtgcccaaataattttgcagcta 184
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 327 cacttggttctagtctcaaggctgaggtacctggcttgtgcccaaataatattgcagcta 386
Query: 185 ttgcagctctcatgtacctgatttttttttcatctttcatctcgtgacactcatggacaa 244
||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||
Sbjct: 387 ttgcagctctcatgtacctga--tttttttcatctttcatctagtgacagtcatggacaa 444
Query: 245 gcacctatgtcattaagcaagagggtagcttaattgatggtggcaggtttctcaaatcag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcacctatgtcattaagcaagagggtagcttaattgatggtggcaggtttctcaaatcag 504
Query: 305 actcgaggatgagccaggagcctggtatgggttcacatagtcattagacattcagaattc 364
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 actcaaggatgagccaggagcctggtatgggttcacatagtcattagacattcagaattc 564
Query: 365 tcatgttcttcagtggagggcctcaactgtgtcatggggttgtgtgagtatatcttgacc 424
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcatgttctttagtggagggcctcaactgtgtcatggggttgtgtgagtatatcttgacc 624
Query: 425 cagacttaactttctttcgttcattaaactagcaatatctgccacagctcttaggatcca 484
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 625 cagatttaactttctttcgttcattaaactagcaatatctgccacagctcttaggaacca 684
Query: 485 attgtttagacaggtgtgtcctagggtattctcagtgccccacactttggactgaaaccc 544
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 685 attgtttagacaggtgtgtcctagggtattttcagtgccccacactttggactgaaaccc 744
Query: 545 cgtgtgtcttttgtttcacaggcaaacagatgaaaaggtttt------------------ 586
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cgtgtgtcttttgtttcacaggcaaacagatgaaaaggtttttgaaacatctggaagttc 804
Query: 587 -------------gaaacatctggaagttctggggccggagctgcaatcagctgttttta 633
||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 805 tggggccggagctgaaacatctggaagttctggggccggagctgcaatcagcagttttta 864
Query: 634 aagcctcgcgtcaggctgactcacctctgacaataggagactgaag 679
|||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 865 aagcctcgagtcaggctgactcacctctgacaataggagactgaag 910
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1080
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1070
Effective search space: 715830
Effective search space used: 715830
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_p05.g1 MSMg01no538_p05.g1 CHROMAT_FILE:
MSMg01no538_p05.g1 PHD_FILE: MSMg01no538_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:43 2005
(635 letters)
>mm_chr13_24060550_24061586
Length = 1037
Score = 1151 bits (595), Expect = 0.0
Identities = 623/633 (98%), Gaps = 2/633 (0%)
Strand = Plus / Minus
Query: 1 aaatcgcccctaatgaggatggctgcagttgacagctgtgggaagcatggctaacagatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 aaatcgcccctaatgaggatggctgcagttgacagctgtgggaagcatggctaacagatg 774
Query: 61 agctgagagtgaacagccagtc--aagagacaggctcagacatgcagaccacatcctgtc 118
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 773 agctgagagtgaacagccagtcaaaagagacaggctcagacatgcagaccatgtcctgtc 714
Query: 119 ccaatactaattaacgttctaaaggaggaagggagggaaggatgctaccagctccaggca 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ccaatactaattaacgttctaaaggaggaagggagggaaggatgctaccagctccaggca 654
Query: 179 ggaggagagactgtgtatctagatacgatatcattaggtggtatttaatctcgttaagta 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 ggaggagagactgtgtatctagatacgatatcattaggtggtatttaatctcgttaagta 594
Query: 239 gaagctaatgactctgggagtcactatgataaaacagcaactgaaattccaacacttggg 298
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 593 gaagctaatgactctgggagtcactaggataaaacagcaactgaaattccaacacttggg 534
Query: 299 cagagaaaactctatggagttaagctggccttatgactggtatgaagtccgtccagtcca 358
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 533 cagagaaaactctatggagttaagctggccttatgactggtatgaagtccgtacagtcca 474
Query: 359 aggcctggctggactcatctgtgggatattttctctttctatgtctgctctccacatgct 418
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aggcctggctggactcatatgtgggatattttctctttctatgtctgctctccacatgct 414
Query: 419 gataatgctaaccagttttaaatgcaagagaatgcctgaaagccgccgcttctgtctctg 478
||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 413 gatgatgctaaccagttttaaatgcaagagaatgcctgaaagcccccgcttctttctctg 354
Query: 479 actcaaaccattcttttgagcttctcagatgagcacactgtgggtatgtgtgtccacttt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 actcaaaccattcttttgagcttctcagatgagcacactgtgggtatgtgtgtccacttt 294
Query: 539 cacacccagcatctcaaatccagcaggtccacagttgacattctgactgtctcacagact 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 cacacccagcatctcaaatccagcaggtccacagttgacattctgactgtctcacagact 234
Query: 599 tgctctatgggcggcttccttcattttgattga 631
|||||||||||||||||||||||||||||||||
Sbjct: 233 tgctctatgggcggcttccttcattttgattga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1037
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1027
Effective search space: 641875
Effective search space used: 641875
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
