Query= MSMg01no539_b10.b1 MSMg01no539_b10.b1 CHROMAT_FILE:
MSMg01no539_b10.b1 PHD_FILE: MSMg01no539_b10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:54 2005
(694 letters)
>mm_chr13_85909014_85910108
Length = 1095
Score = 1274 bits (659), Expect = 0.0
Identities = 683/691 (98%), Gaps = 1/691 (0%)
Strand = Plus / Plus
Query: 5 gaattcttcaccaaccgatttattttgttgacagatgccatctgggtatcattgtctacc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcaccaaccgatttattttgttgacagatgccatctgggtatcattgtctacc 264
Query: 65 tagtcatcagtaaaatgacccccaacttcctcccaagtcttatgtgctcaattgtaaaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagtcatcagtaaaatgacccccaacttcctcccaagtcttatgtgctcaattgtaaaaa 324
Query: 125 ctgggaaaatgatgggttcttttatgggtgaaacactttgaaatatctgatttctatgtg 184
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctggaaaaatgatgggttcttttatgggtgaaacactttgaaatatctgatttctatgtg 384
Query: 185 aaggatgaattggaactgaggtgaacttaattcttctcatatccatagtttatagctttg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaggatgaattggaactgaggtgaacttaattcttctcatatccatagtttatagctttg 444
Query: 245 tctggatttcactggtggagtgtaaaggtgacatgcacacaactggaagttgttttataa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctggatttcactggtggagtgtaaaggtgacatgcacacaactggaagttgttttataa 504
Query: 305 tattctttgaaactgcatatttttaacaatagaagagaggatatacaacaaatattttta 364
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 505 tattctttgaaactgcatatttttaacaatagaagagaggatatacaacacatattttta 564
Query: 365 acatattttaattctttgtgttactccaggactctgagtatacctcttctctattttaaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acatattttaattctttgtgttactccaggactctgagtatacctcttctctattttaaa 624
Query: 425 aatatttttaatttaattgttttctgttacaaatagaattatgagctcattgagaacagc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aatatttttaatttaattgttttctgttacaaatagaattatgagctcattgagaacagc 684
Query: 485 atctctttcatttctattttcagaatggcacatagtaagtacataataaaaaatgaaagt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atctctttcatttctattttcagaatggcacatagtaagtacataataaaaaatgaaagt 744
Query: 545 gtgaaaaccttcatcatgcatccccaataggtatctaagtgatgtgacacagtaagtctt 604
||||||||||||| |||||||||| |||||||||||||||||||||||||||||| || |
Sbjct: 745 gtgaaaaccttcaacatgcatccctaataggtatctaagtgatgtgacacagtaaatcct 804
Query: 605 ttagaattaaaactaaaaccatcaataagtctctgatgacctctttgcagaaga-tatta 663
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 805 ttagaattaaaactaaaaccatcaataagtctctgatgacctctttgcagaagaatatta 864
Query: 664 cacagcactgccattcacctaagtttactac 694
||||||||||||||||||| |||||||||||
Sbjct: 865 cacagcactgccattcacccaagtttactac 895
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1095
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1085
Effective search space: 742140
Effective search space used: 742140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_b10.g1 MSMg01no539_b10.g1 CHROMAT_FILE:
MSMg01no539_b10.g1 PHD_FILE: MSMg01no539_b10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:54 2005
(656 letters)
>mm_chr13_85968863_85969918
Length = 1056
Score = 1158 bits (599), Expect = 0.0
Identities = 640/655 (97%), Gaps = 4/655 (0%)
Strand = Plus / Minus
Query: 1 agaaaaggttgttcattctgttctgaagttacactgtcacctagtggctattcacacata 60
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 agaaaaggttgt---tt-tgttctgaagttacactgtcacctagtggctattcacacata 814
Query: 61 aaatcagagcccccaaaattaaggagattatttgtatattttatcatctcatttatccaa 120
||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 813 aaatcagaggccccaaaattaagtagattgtttgtatattttatcatctcatttatccaa 754
Query: 121 gatatgagatgactgcttcttttataatatccaaaatttgtctggtattttaagatcata 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 aatatgagatgactgcttcttttataatatccaaaatttgtctggtattttaagatcata 694
Query: 181 tttatttgtataacggctattttatgtcattttacttaaagcttatgctctcctttgtca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tttatttgtataacggctattttatgtcattttacttaaagcttatgctctcctttgtca 634
Query: 241 ttcatacgtagagtatgagaaaaatatacaataaaatgatctgggtttcagtagactaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ttcatacgtagagtatgagaaaaatatacaataaaatgatctgggtttcagtagactaaa 574
Query: 301 tatcaaatttgctgtatttttctgattttccaaagtaattttattaactaattctgacta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tatcaaatttgctgtatttttctgattttccaaagtaattttattaactaattctgacta 514
Query: 361 tataaataaagtatcccatttgtctcacaaatactcagttaatatgaaactagaaactcc 420
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 513 tataaataaagtatcccatttgaatcacaaatactcagttaatatgaaactagaaactcc 454
Query: 421 tgagttctgtttcagaacttgatagattctttcccgtgtgcatcttttgccaaaatgagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tgagttctgtttcagaacttgatagattctttcccgtgtgcatcttttgccaaaatgagt 394
Query: 481 aaagatcccttagatacttagcatataacagcttctttattgataccatgattatgaaca 540
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 393 aaagatcccttagatacttagcatataacaacttctttattgatatcatgattatgaaca 334
Query: 541 ttacccaactgtcaaggatgagttctgatataacttaggatgatatgctctttatatcct 600
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ttacccaagtgtcagggatgagttctgatataacttaggatgatatgctctttatatcct 274
Query: 601 ttgtattagagaggatcagcccaagcaaaactgcaagtgaataaagcttcgctgg 655
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 273 ttgtattagagaggatcagcccaagcaaaactgcaagtcaataaagcttcgctgg 219
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
