BAC Information

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BAC

Clone NameMSMg01-539D04
Chromosome13 (Build37)
Map Location 68,804,792 - 68,805,421
singlet/doubletsinglet
Overlap geneAdcy2
Upstream geneZfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272, LOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik
Downstream geneLOC666205, LOC218332, Pols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-539D04.T7 (MSMg01no539_d04.b1)MSMg01-539D04.TJ (MSMg01no539_d04.g1)
ACCAG605747AG605748
length745724
length of high quality
(start - end)
498 (77 - 574)630 (84 - 713)
definitionCHROMAT_FILE: MSMg01no539_d04.b1 PHD_FILE: MSMg01no539_d04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:03 2005CHROMAT_FILE: MSMg01no539_d04.g1 PHD_FILE: MSMg01no539_d04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCAAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAGCCTCTCAAGCAGAGTCAAGTGGTGTGGTCCCTAGGA
TACGCAAGCTAAAAAGACTAGGTCATATCAGTGAGCCAGACCGTGATTTT
TTTTAATGGTATATTTTCTTTATTTACATTTCAAATGTTGCTCACTTTCC
CAGTTTCCCCCTATCCCGTCCTCCCTCCCCCTGATTCTATGAGGGTGGTC
CTGCGCCAACTACGCAACTCCAAGCTCTCCGCCTTGGATTTCCCTATACT
GAGGCATCTATCCAGCCTTCATTGGACCAAGGACCTCTCCTTCTATTGAT
GCCTGACAAGGCCATCCTATGCTACATATGCAGATGGAGCCAAGTGTACT
CCTCAAGACTCCCGAGTATCAAATAACCCTATTAACAGAGCTAAACAAAG
AATCCTCAACTGAGGAATATTGAATGTCCAAGAAGCACCTAAAGAAAAGT
TCAGCATCTTTAGTCATCAGGGAAATGCAAATCAAACTGAAAGACCCGAG
AGGAGCTCCTCACTCAGGCCTCAGGACAATAGTGGACCACAAGAAATCAT
GAGAGACCAAGCTTGATGTAAACAGCATAAGGCTTTATACAGGGCAATCC
CAAGCTCTGGGGATTACTCATATCCCACACAGGGGTAGAGGGGACAAACA
CAAGAGAAAAGGGCTCCCAGTTTTTATAGGCCCTCAGAAAGGTAG
NATTTTTCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTGTTTTCACCCCTA
CAGGGATGACTGGGGGATGCCAGCATCCTCTTCAGGGGCTTTGTCCACTG
CCCATCTTGGAACCTCCCTCAGAAGGAGCTGGCTCTTCTTCTTTGGCAGA
TACCTGTAGGATAGGGGGTACCTACTTCATCCCCCAAATACATTGCTCTG
CTGAAGGAGAAGTGTTAGAAACATAGAACAGAAGAGCAAACTGCCACCAG
CTTTAAAATGACCTCTAACACCAGCCTGAGGGAACCCCAAATGAAAAGCC
CTAAGAGTAGCTCAGTGTCATCCCAACATCTCTAACTCACCCCAACATTC
ATGCTTCTCTGTATCCTGAGCATCCAAAGCTTTGTCTGGATGGTAAAGAT
CTCCCTACACTTTGCCTAGTTCAGAGACACTGGTAGGCTAGGCTAGGCTA
GGACAGGATAGTTATTGGTGCTGATGTGAGAGGGGGACATGTTTGCAAGT
ATGTTGACCAGTCCTGCTGTCTGGAGAGCGAGCATCTTCACATAACAGCA
CACGAATGCCCTTCCAGGAGGAAACTGGCTCAGAAATGAGCAGCTGAGGC
AGGCCTTCCCCTGGAGCCAGTGTGCTGCTGCAGTCCACCAGTCTGTACCC
CTTTCTAATCCTGTCTTAGGGATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no539_d04.g1 MSMg01no539_d04.g1 CHROMAT_FILE:
MSMg01no539_d04.g1 PHD_FILE: MSMg01no539_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:03 2005
         (630 letters)



>mm_chr13_68804592_68805621
          Length = 1030

 Score = 1218 bits (630), Expect = 0.0
 Identities = 630/630 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattgttttcacccctacagggatgactgggggatgccagcatcctcttcaggggctttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 cattgttttcacccctacagggatgactgggggatgccagcatcctcttcaggggctttg 771

                                                                       
Query: 61  tccactgcccatcttggaacctccctcagaaggagctggctcttcttctttggcagatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 tccactgcccatcttggaacctccctcagaaggagctggctcttcttctttggcagatac 711

                                                                       
Query: 121 ctgtaggatagggggtacctacttcatcccccaaatacattgctctgctgaaggagaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ctgtaggatagggggtacctacttcatcccccaaatacattgctctgctgaaggagaagt 651

                                                                       
Query: 181 gttagaaacatagaacagaagagcaaactgccaccagctttaaaatgacctctaacacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gttagaaacatagaacagaagagcaaactgccaccagctttaaaatgacctctaacacca 591

                                                                       
Query: 241 gcctgagggaaccccaaatgaaaagccctaagagtagctcagtgtcatcccaacatctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gcctgagggaaccccaaatgaaaagccctaagagtagctcagtgtcatcccaacatctct 531

                                                                       
Query: 301 aactcaccccaacattcatgcttctctgtatcctgagcatccaaagctttgtctggatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 aactcaccccaacattcatgcttctctgtatcctgagcatccaaagctttgtctggatgg 471

                                                                       
Query: 361 taaagatctccctacactttgcctagttcagagacactggtaggctaggctaggctagga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 taaagatctccctacactttgcctagttcagagacactggtaggctaggctaggctagga 411

                                                                       
Query: 421 caggatagttattggtgctgatgtgagagggggacatgtttgcaagtatgttgaccagtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 caggatagttattggtgctgatgtgagagggggacatgtttgcaagtatgttgaccagtc 351

                                                                       
Query: 481 ctgctgtctggagagcgagcatcttcacataacagcacacgaatgcccttccaggaggaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ctgctgtctggagagcgagcatcttcacataacagcacacgaatgcccttccaggaggaa 291

                                                                       
Query: 541 actggctcagaaatgagcagctgaggcaggccttcccctggagccagtgtgctgctgcag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 actggctcagaaatgagcagctgaggcaggccttcccctggagccagtgtgctgctgcag 231

                                         
Query: 601 tccaccagtctgtacccctttctaatcctg 630
           ||||||||||||||||||||||||||||||
Sbjct: 230 tccaccagtctgtacccctttctaatcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)