Query= MSMg01no539_e12.b1 MSMg01no539_e12.b1 CHROMAT_FILE:
MSMg01no539_e12.b1 PHD_FILE: MSMg01no539_e12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:10 2005
(703 letters)
>mm_chr13_48341469_48342571
Length = 1103
Score = 1266 bits (655), Expect = 0.0
Identities = 686/699 (98%), Gaps = 6/699 (0%)
Strand = Plus / Plus
Query: 5 gaattcacttcttgcaccgggaaccccttctctagctaaggtcacgttcaggaacatgct 64
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gaattcactccttggaccgggaaccccttctctagctaaggtcacgttcaggaacatgct 270
Query: 65 acccaatatttcagtattatacagtgtgctggaatgtttcttgttgctgtaacaaaatcc 124
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 271 acccaatatttcagtattatacagtgtgccggaatgtttcttgttgctgtaacaaaatcc 330
Query: 125 ttgacaaagcgatttaagaaaggaaagatttatttcagctcacagttggagggtacagtg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ttgacaaagcgatttaagaaaggaaagatttatttcagctcacagttggagggtacagtg 390
Query: 185 tatggtggcagggactgcacagcagccggcatgtgaggcagctggtcacattgtgtccac 244
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tatggtggcagtgactgcacagcagccggcatgtgaggcagctggtcacattgtgtccac 450
Query: 245 cttctagaagcagagagagagagagagagagagagagagagagagagagagagagagaga 304
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cttctagaagc----agagagagagagagagagagagagagagagagagagagagagaga 506
Query: 305 ggcgctgagattccacttgctcactttctactttgtatccagttaaatgcatgaggtgct 364
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 507 ggcgctgagattccacttgctcactttctactttgtatccagttaaatgcgtgaggtgct 566
Query: 365 gccccccctctccacctcccttcaaggtggatcttcctgcctgaataaagtctctttgaa 424
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gcccccc--ctccacctcccttcaaggtggatcttcctgcctgaataaagtctctttgaa 624
Query: 425 aatgctctccccggcttgtgcagaagttggtctcctaggtgatcctgaaacttgtcactg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aatgctctccccggcttgtgcagaagttggtctcctaggtgatcctgaaacttgtcactg 684
Query: 485 acaatcaagaagaaccacatatatataattcacttggagatgattggcccaagcgtgtgc 544
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 685 acaatcaagaagaaccacatatatataattcacttggagatgaatggcccgagcgtgtgc 744
Query: 545 ttccagtctaaacagtgacgtgaactctgcctgcaggttcctccctagtgcgctgcttac 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttccagtctaaacagtgacgtgaactctgcctgcaggttcctccctagtgcgctgcttac 804
Query: 605 atgctcagtgagcatcttttttgataaatgtagaactgatctagtctgcatccagtgctg 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 atgctcagtgagcatcttttttgataaatgtagaactgatctagtctgcatccagtgctg 864
Query: 665 ttcctcacatggccgtcctcatcagtaaataccaatacc 703
|||||||||||||||||||||||||||||||||||||||
Sbjct: 865 ttcctcacatggccgtcctcatcagtaaataccaatacc 903
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1103
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1093
Effective search space: 757449
Effective search space used: 757449
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no539_e12.g1 MSMg01no539_e12.g1 CHROMAT_FILE:
MSMg01no539_e12.g1 PHD_FILE: MSMg01no539_e12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:11 2005
(596 letters)
>mm_chr13_48496143_48497138
Length = 996
Score = 1038 bits (537), Expect = 0.0
Identities = 573/585 (97%)
Strand = Plus / Minus
Query: 1 ctcttatcttcgctaaggcagctgcaggtctcttgttccggttcagttttctgagctcga 60
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 585 ctcttatcttctctaaggcagctgcaggtctcttgctccggttcagttttctgagctcga 526
Query: 61 gagtgtctcaggatgctggtacaggacatagtttttctctacctggccaactgagagaaa 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 525 gagtgtctcaggatgctggtacaggacatggtttttctctacctggccaactgagagaaa 466
Query: 121 agcaaggttgaaaaacctgggtactttagggattttttttttctgctgtgctttcttctt 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 agcaaggttgaaacacctgggtactttagggattttttttttctgctgtgctttcttctt 406
Query: 181 gtgaccatgaaaatgtcattcctgtagggactggaaagtcttgtgcacagaggtgatgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gtgaccatgaaaatgtcattcctgtagggactggaaagtcttgtgcacagaggtgatgcc 346
Query: 241 cagcaaggaggggtggcatacctgcaagtagtaatgtccccattcacgtagcttcttcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 cagcaaggaggggtggcatacctgcaagtagtaatgtccccattcacgtagcttcttcct 286
Query: 301 gatcagcaacaggaatgaagcagttgggctggggtgtgtgtatgtgagatcacagatcac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gatcagcaacaggaatgaagcagttgggctggggtgtgtgtatgtgagatcacagatcac 226
Query: 361 gttcgaagttaatagtgtgatattcgatcgacttcttgtgtctttctctgccactctttc 420
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 attcaaagttaatagtgtgatattcgatcgacttcttgtgtctttctctgccactctttc 166
Query: 421 ttgaaacagggtctcttgtgaacctagagcctgctgttgcagtgaccctggctggtcagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 ttgaaacagggtctcttgtgaacctagagcctgctgttgcagtgaccctggctggtcagt 106
Query: 481 gagcctttagggtccgtctgtctgcagttcgccagcactggggttataggcatgcacggg 540
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 105 gagcctttagggtccgtctgtctgcagctcgccagcactggggttataggcatgcaccgt 46
Query: 541 tgtgtatggcttggcttttatatgggggctgggatcacatagagt 585
||| ||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 45 tgtatatggcttggcttttatatgggggctgagatcacatggagt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space: 577796
Effective search space used: 577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
