Query= MSMg01no539_e20.b1 MSMg01no539_e20.b1 CHROMAT_FILE:
MSMg01no539_e20.b1 PHD_FILE: MSMg01no539_e20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:12 2005
(590 letters)
>mm_chr13_93055797_93056786
Length = 990
Score = 969 bits (501), Expect = 0.0
Identities = 569/595 (95%), Gaps = 8/595 (1%)
Strand = Plus / Plus
Query: 4 ggaattcagactatacacattgccaactttaatgtctagaactatgccacagtcagttaa 63
||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 204 ggaattcagactatagacattgccaactttaatgtcaaggactatgccacagtcagttaa 263
Query: 64 agaggcctaggaagatgctttcatcctattcttccctgcctcgtcctaccatgtggctta 123
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 264 agaggcctaggaagatgctttcatcctattcttccctgcctcctcctatcatgtggctta 323
Query: 124 ataacacacaggtaccatacaaggaagtcacaaacaaagtaggatgaagaacagctcatg 183
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 324 ataacacacaggttccatacaaggaagtcacaaacaaattaggatgaagaacagctcatg 383
Query: 184 aggcaaatatacagagcacatttccctgtctctgagggggtccgatgtgcaggtgt---a 240
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 384 aggcaaatatacagagcacatttccctgtctctgagggggtccggtgtgcaggtgtcaga 443
Query: 241 -agagcaccaaaccctgcaaaaagataagactgaaaacccagtgcagatcgactttgtca 299
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cagagcactaaaccctgcaaagagataagactgaaaacccagtgcagatcgactttgtca 503
Query: 300 gtctggatcagactttagggagtctaatgctagaatggtcattgccagcatatttaaaac 359
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 504 atctggatcagactttagggagtctaatgctagaatggtctttgccagcatatttaaaac 563
Query: 360 ccagaacaatttgggacaaagtttcaagggaacaatcagtctggtcagttcaatttcagg 419
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 564 ccagaacaatttgggacaaagtttcaagggaacaatcagtctgatcagttcaattccagg 623
Query: 420 tacacaatagagctgaaggcatgattatagatgaactctttgacaaagtacatgtgacca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 624 tacacaatagagctgaaggcatgattatagatgaactctttgacaaagtacatgtaacca 683
Query: 480 tgagggtggggtctatagctaaaaaggcctagaatctagtgtggtatct----aatagca 535
|||||||||| | |||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 684 tgagggtgggctttatagctaaagaggcctagaatctagtgtggtatctgactaatagca 743
Query: 536 tagaggtcagcaggccatgaaatacaagtggcatcttccctaaggatgggtaatg 590
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tagaggtcagcaggccatgaaatacaagtggcatcttccctaaggatgggtaatg 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_e20.g1 MSMg01no539_e20.g1 CHROMAT_FILE:
MSMg01no539_e20.g1 PHD_FILE: MSMg01no539_e20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:12 2005
(647 letters)
>mm_chr13_93216670_93217720
Length = 1051
Score = 1201 bits (621), Expect = 0.0
Identities = 642/651 (98%), Gaps = 4/651 (0%)
Strand = Plus / Minus
Query: 1 atagaaaggtgctgtatccctctacttgttctttttgatgtgagcctgcctctgaggagc 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 851 atagaaaggtgctgtatccctctacttgttctttttgatgtgaacctgcctctgaggagc 792
Query: 61 tttcaaggttctgagagtcacaagagtcatacgttcatgaacaaaagcaaggatagttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tttcaaggttctgagagtcacaagagtcatacgttcatgaacaaaagcaaggatagttaa 732
Query: 121 gtgttaaaaagaaagat----tcagacgggccatatctcttcctgtagaaactgagattg 176
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gtgttaaaaagaaagattcagtcagacgggccatatctcttcctgtagaaactgagattg 672
Query: 177 atccagtctgctggcccaagaaggacttccgtcagggtttgacatagacaggcccgcaga 236
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 671 atccagtctgctggcccaagaaggacttccgtcagggtttgacatagacaagcccgcaga 612
Query: 237 ggaactgggattactgttctagtggccacatccgtattacttttctgattttactgtcat 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ggaactgggattactgttctagtggccacatccgtattacttttctgattttactgtcat 552
Query: 297 tactcgtctctcttctgtatacccatttatccgtaagctgagaccacaatttgacccgtc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tactcgtctctcttctgtatacccatttatccgtaagctgagaccacaatttgacccgtc 492
Query: 357 acatggttttggaacatgacggtttcctgcatctcagggacgaagaaatggaacagacat 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 acatggttttggaacatgacggtttcctgcatctcagggacgaagaaatggaacagacat 432
Query: 417 ctgatctccaaacatttccctgtggcctccatgtcgagactccatccaggttgtggggaa 476
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ctggtctccaaacatttccctgtggcctccatgtcgagactccatccaggttgtggggaa 372
Query: 477 ggcccccagtcagctgagaagaaaccttgaggtgccgctgaggtgcttggactctccagg 536
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ggcccccagttagctgagaagaaaccttgaggtgccgctgaggtgcttggactctccagg 312
Query: 537 gatcacagcccttctgaaagcagaaaagggttgtggtcaatttgaagtgtgaggaaggca 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gatcacagcccttctgaaagcagaaaagggttgtggtcaatttgaagtgtgaggaaggca 252
Query: 597 aggagaaccaaccaggagactggggattctcagagaagagaaatgaagacc 647
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gggagaaccaaccaggagactggggattctcagagaagagaaatgaagacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1051
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1041
Effective search space: 663117
Effective search space used: 663117
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
