Query= MSMg01no539_g12.b1 MSMg01no539_g12.b1 CHROMAT_FILE:
MSMg01no539_g12.b1 PHD_FILE: MSMg01no539_g12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:21 2005
(661 letters)
>mm_chr13_101161184_101162244
Length = 1061
Score = 1181 bits (611), Expect = 0.0
Identities = 640/657 (97%), Gaps = 12/657 (1%)
Strand = Plus / Plus
Query: 5 gaattcaaggtcatcctggtttacaaattgagttccaggacaggcaggagtaaacctctg 64
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaggccatcctggtctacaaattgagttccaggacaggcaggagtaaacctctg 264
Query: 65 tcttgaatcccccttccagaaaaaggaataataaacaaatgaatacatatcctcctctgg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcttgaatcccccttccagaaaaaggaataataaacaaatgaatacatatcctcctctgg 324
Query: 125 gagcatactaaattctctcccccttgaataccataatttatactttcttttagaatacaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagcatactaaattctctcccccttgaataccataatttatactttcttttagaatacaa 384
Query: 185 ataaaaaagaaaccatataccatctctttaacattgcaacggtgtccctgcgcttacaag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataaaaaagaaaccatataccatctctttaacattgcaacggtgtccctgcgcttacaag 444
Query: 245 cattcttgattagccttgaacttgtagtaatcatcctgcctcagtctctcaaatgctaga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cattcttgattagccttgaacttgtagtaatcatcctgcctcagtctctcaaatgctaga 504
Query: 305 gaatttaatgcatttttactacattttaaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaatttaatgcatttttactacattttaaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtg 564
Query: 365 tgtgtgtgtgtgtgtgtaaacacacatgcatggcaactgtgcagaagtctgaagacaact 424
||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtgt------------aaacacacatgcatggcaactgtgcagaagtctgaagacaact 612
Query: 425 tgaatgggtcaagactctctttctgcccagtgtatcccagggatcacactcaggctatca 484
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 613 tgaatgggtcaagactctctttctgcccagtgtattccagggatcacactcaggctatca 672
Query: 485 ggcttacagacatgtacctttacttgctgagccatcctgcctaccctacttaatgcactc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ggcttacagacatgtacctttacttgctgagccatcctgcctaccctacttaatgcactc 732
Query: 545 ttaaaaccctgtcagttcaggatgaagaaattagaaggttacaatgtattaaacccagta 604
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 733 ttaaaaccctgtcagttcaggataaagaaattagaaggttacaatgtattaaacccaata 792
Query: 605 ttatctatgattaacttcctgtatcaccaagtttttaatcacagaccataagagatt 661
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 ttatctatgattaacttcctgtatcaccaagtttttaatcacagaccataagagatt 849
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_g12.g1 MSMg01no539_g12.g1 CHROMAT_FILE:
MSMg01no539_g12.g1 PHD_FILE: MSMg01no539_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:21 2005
(608 letters)
>mm_chr13_101312277_101313284
Length = 1008
Score = 1100 bits (569), Expect = 0.0
Identities = 582/587 (99%), Gaps = 2/587 (0%)
Strand = Plus / Minus
Query: 1 tagagcaaaaatactgcacttttcactcaggaaagaactctttgatacgtgtttcatgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tagagcaaaaatactgcacttttcactcaggaaagaactctttgatacgtgtttcatgtt 526
Query: 61 tttctttcctttccttttttttttttttttgagaattggaaacccagataagagaatgtg 120
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tttctttccttt--ttttttttttttttttgagaattggaaacccagataagagaatgtg 468
Query: 121 gtgggctgcaatcacaccatccacacctacattttgaagtcacttttaataagggcatac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gtgggctgcaatcacaccatccacacctacattttgaagtcacttttaataagggcatac 408
Query: 181 ttgtaaattagagtgtgctttagttacctctggagggctgacaggtgctagacactgttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ttgtaaattagagtgtgctttagttacctctggagggctgacaggtgctagacactgttg 348
Query: 241 tatcagcagtctcaagtgcattctcatcttacatgagcatttaaaggtaataggaaatta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tatcagcagtctcaagtgcattctcatcttacatgagcatttaaaggtaataggaaatta 288
Query: 301 tttatcttttttagttcggagggattggatctaggaccttggacattctaggcaagccct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tttatcttttttagttcggagggattggatctaggaccttggacattctaggcaagccct 228
Query: 361 ccaccatggagctacagttgtcagctttttgctttgtttttgagagaggaaagggtctta 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 ccaccatggcgctacagttgtcagctttttgctttgtttttgagagaggaaagggtctta 168
Query: 421 ctgtgtttgtgtggctaggttggtctccagcttgctgttcttttgccccaacttcctgag 480
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 ctgtgtttgtgtgcctaggttggtctccagcttgctgttcttttgccccaacttcctgag 108
Query: 481 aagccggggtttctggtatataacattgtagctggcaatgagattattacttttttggct 540
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 107 aagccggggtttctggtatataacattgtagctggcaatgagattattgcttttttggct 48
Query: 541 tttgtttctttattttaaaaatttaaggggctggagagatagatggc 587
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 tttgtttctttattttaaaaatttaaggggctggagagatagatggc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
