BAC Information

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BAC

Clone NameMSMg01-539L03
Chromosome13 (Build37)
Map Location 96,393,211 - 96,393,557
singlet/doubletsinglet
Overlap genenone
Upstream geneTbca, Otp, Wdr41, Pde8b, Zbed3, Aggf1, Crhbp, S100z, F2rl1, F2r
Downstream geneIqgap2, F2rl2, Sv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-539L03.T7 (MSMg01no539_l03.b1)MSMg01-539L03.TJ (MSMg01no539_l03.g1)
ACCAG606125AG606126
length748867
length of high quality
(start - end)
348 (73 - 420)167 (79 - 245)
definitionCHROMAT_FILE: MSMg01no539_l03.b1 PHD_FILE: MSMg01no539_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:44 2005CHROMAT_FILE: MSMg01no539_l03.g1 PHD_FILE: MSMg01no539_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:18:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAGTGAATTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
GCCGCGGAATTCACCTTTTCATTTCCTTTTATAGCAGCTGGTGGTGGTAA
TATGAGAGTCCATGTCCCATGAAACCACAGGAAGAAAGGAGAGGCACTTC
CTGGTGTGCCTAAGACCTCCACATTCATTCTCCAAGCAAACAGTAGGTTT
AAATAAATTCCAAACTAGCTAGGAGGAGACCTGTTTTTGTCTTTTGTTGT
TACAAACTTGTATTGGTATTTTAGGTTTAGAAATAGTGTCTCTCATGATG
GAATAACAAGTATTTCCATTAACTATCTCCCCAGGACAGTGGTAAGCACC
TATATGGCCTAGGCCAAATTATTGAGCAAGGGCCAAATTTAGTATGTGTT
TAAAACAAAATAAATGTTTTGCCCACCCCCTCACTGTGGTGCACACTTGT
AATCCCAGCACTTGAGAGGCAAGGGCAGGACCACCAGGAGTTCAAGACCA
CCCTCAGCTACTTAGGTTCTATGGTGACTTTGACGTCAGCTGGGCTACAT
GAGATTCCGTCTTAAAACAGAAACTTCAGTTTGTGTATAAAGGGATAAAC
TCTAGTGTATTTTAACGTATAGCTTTTACATTATAATGAAAACAAGGCAG
CTGTATTATTCCATACCCTCTGTTTTATATGGAAAACTAAAGGAATGTTC
GGTTGGCACCAAATCATCCAGTATACGCCCCCTTCATTCCAACTGTTN
NTTGTATTGCTATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCTGTAGACCAGGCTGGCTT
CGAATTCAGAGATTCTCCTGGGTCTGCCTCCTGAGTGCTGGGATTAAAGG
CGTTACATTTCTATTTTACTAAGTTGCTCAGGTGAACTTTTTTTGCCACT
TGGAGTTTGAGAATCATGGTTTTTTTTTGGGGGGGGGGGAGGGTGTANNA
TCNTCCCCCGCCCGGTTGGTGGGGGCGTCGTTTGGGGGGGGGNGTGGGGT
TGGTGTTTGTGGGCGTGCGGTTTCTGTGTTTTGTGGCTTCTGAGGTGCGT
GCCGGTGTTTTTTTTGCTCTTTTTTGTTCCGCTGTGTCCGTTTCTTGTCT
TTTTTTTGGTGACTTGGCGCCCTCCGGTGATCTCTTCTCCTCTTCGCAGT
AGTCCGTCCCTTTTCTCTTTCTCTTTCCTTTTCCCCATCCTTTTTGTTTC
CTGCTTCGTGCTAGCGCCGTGTTTCTGCTTTGCTTTTTTTTTTGCACCTT
TTGTCTTCCCTTGTTTATTTTTCGTCCAGCCTCCGCTCTCCTTGTTCTTA
CCTGTTTGCTTGCATATCTTTTCCCTCGCACTTCGCTCTCTGTTTTTTTC
GTCTCGTCCTCGTTTTGCCCGTTCTTTTTTCCCTTTTTTCTCTTTTCGTT
TTCGCTTTCCCGTTATCCTTACTTCCGTGCCGCTGTTTTCCCAGCCGTTG
TTTTTCTATCTACCGTAGGTTTTGTTCGCGTTGGTATTGTTTTGGCAGTC
TTCCCGTGTTCACTACTCTTTCTTTCCTCCCATTATTTTCCGCCGTGTTT
GGTGTTTCTTCTCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no539_l03.b1 MSMg01no539_l03.b1 CHROMAT_FILE:
MSMg01no539_l03.b1 PHD_FILE: MSMg01no539_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:44 2005
         (348 letters)



>mm_chr13_96393011_96393757
          Length = 747

 Score =  650 bits (336), Expect = 0.0
 Identities = 345/348 (99%), Gaps = 1/348 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccttttatagcagctggtggtggtaatatgagagtccatgtcccatgaaaccacagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttccttttatagcagctggtggtggtaatatgagagtccatgtcccatgaaaccacagga 260

                                                                       
Query: 61  agaaaggagaggcacttcctggtgtgcctaagacctccacattcattctccaagcaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaaggagaggcacttcctggtgtgcctaagacctccacattcattctccaagcaaaca 320

                                                                       
Query: 121 gtaggtttaaataaattccaaactagctaggaggagacctgtttttgtcttttgttgtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaggtttaaataaattccaaactagctaggaggagacctgtttttgtcttttgttgtta 380

                                                                       
Query: 181 caaacttgtattggtattttaggtttagaaatagtgtctctcatgatggaataacaagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaacttgtattggtattttaggtttagaaatagtgtctctcatgatggaataacaagta 440

                                                                       
Query: 241 tttccattaactatctccccaggacagtggtaagcacctatatggcctaggccaaattat 300
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttccattaactagc-ccccaggacagtggtaagcacctatatggcctaggccaaattat 499

                                                           
Query: 301 tgagcaagggccaaatttagtatgtgtttaaaacaaaataaatgtttt 348
           |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 500 tgagcaagggccaaatttagtatgtgtttaaaacaaaacaaatgtttt 547


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 747
Length adjustment: 9
Effective length of query: 339
Effective length of database: 738
Effective search space:   250182
Effective search space used:   250182
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)