BAC Information

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BAC

Clone NameMSMg01-540E18
Chromosome13 (Build37)
Map Location 23,079,117 - 23,079,724
singlet/doubletsinglet
Overlap genenone
Upstream geneGm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18
Downstream geneV1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-540E18.T7 (MSMg01no540_e18.b1)MSMg01-540E18.TJ (MSMg01no540_e18.g1)
ACCAG606582AG606583
length770777
length of high quality
(start - end)		611 (43 - 653)585 (71 - 655)
definitionCHROMAT_FILE: MSMg01no540_e18.b1 PHD_FILE: MSMg01no540_e18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:31 2005CHROMAT_FILE: MSMg01no540_e18.g1 PHD_FILE: MSMg01no540_e18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:19:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTCTGTAGACCAGCCTGGTCTTGAACTCAGAAATCAGAAATCCACCT
GCCTCTGCCTCCCAAGTGCTGGTATTAAAGGCATTCACCACCACTGCCCA
GCTTAAATAATTTTTTTTTAATTATAAATAAAATAATAATCTCTGGTCCA
ATATAGAGTTCTTCCTCCTATTGTCTCTGTTTTTTCCTTTAGAAAATGTC
AAAATATTTTCTTTCTTTGAAATACAAAGAAAACTAATAGTTTAAAGCTT
GTAGTTTTCTGACTAGTTTATTCAATAAAAATCAAAGAAATATCAAAAAG
AGAGAGCACTTTGCTCAGTTTCCATTCAGGAGTTCCATAGATAAAGTTGT
TCCCTGCATTGAGAAGACAAGCTAGGGTTCACTGGTGATTTCCCTATATC
CCTCAAGCTTGTGAAGGCTTGATACCCCAGTATATGGGAATGCCAGGGTG
GGGAGGCAGGAGTGGGTTGGTGTGTGTAAGAACACCCTCATAGAAGCAGG
GGGATGGGGAATGGGATAGGGAGTTTCAGGGGAGGGGACCGGGAAAGAGG
ATAACATTTGAAATGTAAATTAAGAAAATATCCAGTGGGTTTTTTTTTTT
AAAGAAAGATTCTGACAGTAAAGTGGAAGAGGAAGGATGATTCTTGATGT
CAGCCTCAGTCTCTGTCTCATGTGTATGAGCACAAATGTAAGTGTGTAAC
CTCACATACTCATGGATCTN

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTACTTTCCTTTTTATAATCCCTTGATATT
TCTCAGTTCTCATATTATTCTAGATAGGATATCAAGTACTTTATTTAATC
ATCATGGAGAGAGTAAATGGTCTTGTTACTGATTTTAGTGAGGTTGGTTT
GAGTTTCCATTTAGAATGATGTTGGCTGTGTGTTTTATGTAAATCACTTT
TAATATATTAACATATGTCCCTTGCCATTCTAGTCTCTCCAAGACTTTAA
TAAGAATGAAATGGAGGATTTTGTCAAAGGCTAATTAGATATCACATGGT
TTTTGCCTTTTAGTTTGTTTATGTAGTAGGTTGCATTTAATGATTTAAAG
CAATAAAGTGTTATATAAGCAAAAACCATTTGTGTATCCCTTGGATGAAG
CCAATATGATCATGGTGGATACTGTTTTTGGAGTGTTCTTGAATTTAATT
TGCAAAAATTATTAAGAATGTTTGTCTCCATGTTCATAAAAGATATTGAT
CTATAATTTCCTTCTTTTTTTTTTTTGTTGGGTCTATAACAGGCCCCCAG
CCCTTAGTACAACTGAGTTTGTGATAGAGATATGATTCAGGTTGTAAAAC
TCACCATGTAGAGAGCACAACTTCCCAAAACTAAAAGAAAGGCCTACTTC
ACCAAAGTCCATATGGTTCTGAGAAGAGTTCAAAATGTACTACCCAAGCC
TTTTGGCTTCTATAGATCTACCTCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no540_e18.b1 MSMg01no540_e18.b1 CHROMAT_FILE:
MSMg01no540_e18.b1 PHD_FILE: MSMg01no540_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:31 2005
         (611 letters)



>mm_chr13_23078975_23079985
          Length = 1011

 Score = 1114 bits (576), Expect = 0.0
 Identities = 600/608 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactctgtagaccagcctggtcttgaactcagaaatcagaaatccacctgcctc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 ggaattcactctgtagaccagcctggtcttgaactcagaaatcagaaatccacctgcctc 691

                                                                       
Query: 64  tgcctcccaagtgctggtattaaaggcattcaccaccactgcccagcttaaataattttt 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 690 tgcctcccaagtgctggtattaaaggcattcaccaccactgcccagcttaaataatattt 631

                                                                       
Query: 124 ttttaattataaataaaataataatctctggtccaatatagagttcttcctcctattgtc 183
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 630 ttttaattataaataaaataattatctctggtccaatatagagttcttcctcctattgtc 571

                                                                       
Query: 184 tctgttttttcctttagaaaatgtcaaaatattttctttctttgaaatacaaagaaaact 243
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tctgctttttcctttagaaaatgtcaaaatattttctttctttgaaatacaaagaaaact 511

                                                                       
Query: 244 aatagtttaaagcttgtagttttctgactagtttattcaataaaaatcaaagaaatatca 303
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 510 aatagtttaaagcttgtagttttctgactagtttattcaataaaaatcaaggaaatatca 451

                                                                       
Query: 304 aaaagagagagcactttgctcagtttccattcaggagttccatagataaagttgttccct 363
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 450 aaaagagagagcactttgctcagcttccattcaggagttccatagataaagttgttccct 391

                                                                       
Query: 364 gcattgagaagacaagctagggttcactggtgatttccctatatccctcaagcttgtgaa 423
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 390 gcattgagaagacaagctagggttcactggtgatttccctatgtccctcaagcttgtgaa 331

                                                                       
Query: 424 ggcttgataccccagtatatgggaatgccagggtggggaggcaggagtgggttggtgtgt 483
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ggcttgataccccagtatacgggaatgccagggtggggaggcaggagtgggttggtgtgt 271

                                                                       
Query: 484 gtaagaacaccctcatagaagcagggggatggggaatgggatagggagtttcaggggagg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gtaagaacaccctcatagaagcagggggatggggaatgggatagggagtttcaggggagg 211

                                                                       
Query: 544 ggaccgggaaagaggataacatttgaaatgtaaattaagaaaatatccagtgggtttttt 603
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 210 ggaccgggaaagaggataacatttgaaatgtaaattaagaaaatatctagtgggtttttt 151

                   
Query: 604 tttttaaa 611
           ||||||||
Sbjct: 150 tttttaaa 143


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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