CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTACTATATTGAATTACATCTAAATATATGGCAGCAAAATAAATGT
TTACTATTAGTAAATGAAATAGTAGATACATTCTGAAATGTTACACTATC
TAATAGAAAATTTAAATTTAAAGTAAAATAATAGTACATCTTTTTCCTTT
AGAGCTTATTTATTTCAATAATTTAACAGAGATTATTTATATAGATGAGT
CAAAATAATGCCAATAAAAATAAATCTAACTTTAATCACATAAATAAATA
TCATCAACTTTTTCATTTTGGACAGAATTTCACATTTCTAGTGAGAATAA
ACTGCTAATTTACAGAGGTGACATGATTCCTTACTATAGGAAGCAGTATC
ATTCATTTCAAGCCTAATTGTTTATGATAAGCAATCATTTCAAATGTTTA
AAAATGCTTAAACATCCTCCTATAGGTGGAAGTCCCCTATTTGCCTCTTG
ATTGGGTCAATAAAGATGGCAGAAGCTAGTCACTGGGCGAAGGATAAGGC
CGGATTTTTGGGCAGGACAGGAAGAGGAGTTGGGGAGAGGATGCAGACAT
GTAGGTCTCTCAGGGCACAGCTGCCAGCAGAGACTAAGGAGGACAGGGCA
GGATACACTTTGCCCAGCCTTTGAGTTATCTGGTCAATTTTAAAATATAA
AAGTCTCTAATGGACTTCCTTCCTCGGGGCTAAAGGGAGCTGGGTGAGAT
GGTCTTACTGGCACAGGNNCAGGGGCTGTTCTTGGN

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTATTTAGCTCTCTACCCAATTTT
TCCCTTGAGTTATCTGGTTTTTTGGTGTCTACATTCTTGAGTTCTTCATA
TATTTTGAACATTAGCCTTCCATCAAATGTAGGATTAGTTAAGATCTTTT
CTCAACCTGTAGGTTAATGTTTTGCCCTATTGACAGTGTCCTTTGCATAA
CCAAAGCTTTGCAGTTTTCTAAGTTCCAATATGTAAATTCTTTATCTTAG
AACCTGAGCCATTGTGTTCTGTTCACAAAATTTCCACTCTTCCATTGCAT
TCACGTATATTTCCCTATGAGCATAAGAGCATACATGGACTGGTCTATGG
CTAACAGCACTAATGTAGTGGAGGACTGCTGTGTCCCACCAAAGTGGGAA
AGGATAATCCTAATCCAATATAGAATTATTGCCCCAGAGAGGAGGGATAT
GGTTGAGGTGCACTGAAGTTGTTGGAAATGAGATTGTGGGTGAGAAGATG
GGAGTAAGAAAGCACCCTCTTCGAAGCAAAGGGGGACATGATGAAAAACT
CCAAGAGAGGTGACCGGGAAGGGTGGCAACAATTGGAATGTAAATCAATA
AAATACATTAAAAAAAAAAAGAAGGATCACTACCAAACTCATTCTATGAG
GCCATAATCACTCTGATACCTAAATCATACAAAGGCTTAACAAAGAAAGA
GAACTTCAGA

Query= MSMg01no541_f21.b1 MSMg01no541_f21.b1 CHROMAT_FILE:
MSMg01no541_f21.b1 PHD_FILE: MSMg01no541_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:20:59 2005
         (559 letters)



>mm_chr13_87899511_87900469
          Length = 959

 Score = 1065 bits (551), Expect = 0.0
 Identities = 557/559 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaaatatatggcagcaaaataaatgtttactattagtaaatgaaatagtagatacattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ctaaatatatggcagcaaaataaatgtttactattagtaaatgaaatagtagatacattc 549

                                                                       
Query: 61  tgaaatgttacactatctaatagaaaatttaaatttaaagtaaaataatagtacatcttt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 548 tgaaatgttacactatctaatagaaaatttaaatttaaagtaaaataatagtacgtcttt 489

                                                                       
Query: 121 ttcctttagagcttatttatttcaataatttaacagagattatttatatagatgagtcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ttcctttagagcttatttatttcaataatttaacagagattatttatatagatgagtcaa 429

                                                                       
Query: 181 aataatgccaataaaaataaatctaactttaatcacataaataaatatcatcaacttttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aataatgccaataaaaataaatctaactttaatcacataaataaatatcatcaacttttt 369

                                                                       
Query: 241 cattttggacagaatttcacatttctagtgagaataaactgctaatttacagaggtgaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cattttggacagaatttcacatttctagtgagaataaactgctaatttacagaggtgaca 309

                                                                       
Query: 301 tgattccttactataggaagcagtatcattcatttcaagcctaattgtttatgataagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tgattccttactataggaagcagtatcattcatttcaagcctaattgtttatgataagca 249

                                                                       
Query: 361 atcatttcaaatgtttaaaaatgcttaaacatcctcctataggtggaagtcccctatttg 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 248 atcatttcaaatgtttaaaaatgcttaaacatcctcctataggtggaagtcccctaattg 189

                                                                       
Query: 421 cctcttgattgggtcaataaagatggcagaagctagtcactgggcgaaggataaggccgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 cctcttgattgggtcaataaagatggcagaagctagtcactgggcgaaggataaggccgg 129

                                                                       
Query: 481 atttttgggcaggacaggaagaggagttggggagaggatgcagacatgtaggtctctcag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 atttttgggcaggacaggaagaggagttggggagaggatgcagacatgtaggtctctcag 69

                              
Query: 541 ggcacagctgccagcagag 559
           |||||||||||||||||||
Sbjct: 68  ggcacagctgccagcagag 50


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)