BAC Information

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BAC

Clone NameMSMg01-541M24
Chromosome13 (Build37)
Map Location 42,757,947 - 42,928,519
singlet/doubletdoublet
Overlap genePhactr1
Upstream gene9530008L14Rik, LOC100039272, Hivep1, Edn1, Hn1-ps4
Downstream geneTbc1d7, Gfod1, Sirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182, LOC100039403, Cd83
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-541M24.T7 (MSMg01no541_m24.b1)MSMg01-541M24.TJ (MSMg01no541_m24.g1)
ACCAG607738AG607739
length764767
length of high quality
(start - end)		599 (48 - 646)310 (80 - 389)
definitionCHROMAT_FILE: MSMg01no541_m24.b1 PHD_FILE: MSMg01no541_m24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:37 2005CHROMAT_FILE: MSMg01no541_m24.g1 PHD_FILE: MSMg01no541_m24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:21:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,757,947 - 42,758,541)(42,928,211 - 42,928,519)
sequence
NNNGGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTCATAGCATCGTAGCTTCCTGCCCTCTTCCGTGGCTTCTCTT
TCTACCAAAGGTCCCGCTCCATCTCTCTGAACCTTTCTTCCAGCCTAAAG
CTGTGCTTCTTCCCAAGGCCTGTCTGGCTCTTCTGATCTCTATCCCCACA
CTGACTATATGACATACCCAGTCTGACTCCATCTTAAGGTTAGATGCCAT
CTTGTTATAACGTCAAAATAAGCTCGTTTCTGTTTTCTGTAAAACTTAAG
TTTGACCATGTCTTGACCCATTTTTCTGGAATTTGACATATTCAAAATCC
TATGAAATTTGACTCACTCCTTGATTATACCCTGATAAGATGTTACACCA
AATAACTTTAACATGTTCTGCCAAGTTCCTATCTAACCAAAAGTACTCTG
AAAAGTCCCCCAATGCTTAGAAAAATCTTCTACTCTTACAGTTTAGGGAC
TATAAAAACCCTACTTCTCCTCTGCTCAGGGCTGACTTCCCAAAGCCTTT
ACTTAGGGAGTGGCAATTGTCAGATCAGCTGTATTGTGTATATATAATCA
AGCTTGCTATAAATTTGGCTAGTTTGGGTAGTTATCCTTACTCTCATCCA
GTGGGATTAATACATACTCATTCTATTTGCTTTAAGACCCAATATGCTGG
TCGAAATCCACACCTAGAAGTGTGACCCGCTCCTTTTACATTCAGTTCTA
CTTTTAAAGAAACA

NNCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCACGAGATTTTTCCATCTCA
CAAGCTCGAGACTAAAGATGGTGTCAAGGTTGTTGTTGCTGTTTTAGTTT
TTCAATTAGCGGTCTGGATTTCCTCAAATGTTTACTAGAGCCTTTGGTTT
ATGTTGAAAGTTAGCCAGATAGTTTGAATAATAGGAATTCAAAAGCCAAG
TTTCCACCTACATCACTACAGTTAAGAAAGAGTTGTCATGCTGGGCGGTG
GTGGCACATGCCTTTAATCCCAGCACTTGGGGGCAGAGGCCAGCCTGGTC
TACAAAGTGAGTTCCAGGTCAGCCAGGGTTATACAGAGAAACCCTGGTCT
TCAAAAAAAAAAAAACAAAAACCCCAAAACTGGGAAAAACCCCCACCCCC
CCCCCAAAAAAAAAAAAAAGGGCCCTTTTTTTTTTTTAAAAACCCCCCCC
CCCGGGGGGGGGGGGAAAAAATTTTGGGGGGGGGGGGGCGCCCCCCCCCC
CCCCCCCCCCCTTCTTTTTTTTTTTTTTTTCTCCCCCCCCCCCCCACCCA
NAGAAACAAAAAGAAAGAGCTGTTTTCGCCTCNTTTCTATNTAGTCCTTT
TTCTTTTTTCTTAGTACTTCTTTTTTATTCTGCGTTGTTTTATTTTTATC
ACCTTTTTGTTTCTATCTTCTGTTCCCTCATTATATTGAAAAAGCTTTTA
TAATTATAGATGTGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no541_m24.b1 MSMg01no541_m24.b1 CHROMAT_FILE:
MSMg01no541_m24.b1 PHD_FILE: MSMg01no541_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:37 2005
         (599 letters)



>mm_chr13_42757743_42758741
          Length = 999

 Score = 1151 bits (595), Expect = 0.0
 Identities = 595/595 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcatagcatcgtagcttcctgccctcttccgtggcttctctttctaccaaagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcatagcatcgtagcttcctgccctcttccgtggcttctctttctaccaaagg 264

                                                                       
Query: 65  tcccgctccatctctctgaacctttcttccagcctaaagctgtgcttcttcccaaggcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcccgctccatctctctgaacctttcttccagcctaaagctgtgcttcttcccaaggcct 324

                                                                       
Query: 125 gtctggctcttctgatctctatccccacactgactatatgacatacccagtctgactcca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtctggctcttctgatctctatccccacactgactatatgacatacccagtctgactcca 384

                                                                       
Query: 185 tcttaaggttagatgccatcttgttataacgtcaaaataagctcgtttctgttttctgta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcttaaggttagatgccatcttgttataacgtcaaaataagctcgtttctgttttctgta 444

                                                                       
Query: 245 aaacttaagtttgaccatgtcttgacccatttttctggaatttgacatattcaaaatcct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaacttaagtttgaccatgtcttgacccatttttctggaatttgacatattcaaaatcct 504

                                                                       
Query: 305 atgaaatttgactcactccttgattataccctgataagatgttacaccaaataactttaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgaaatttgactcactccttgattataccctgataagatgttacaccaaataactttaa 564

                                                                       
Query: 365 catgttctgccaagttcctatctaaccaaaagtactctgaaaagtcccccaatgcttaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 catgttctgccaagttcctatctaaccaaaagtactctgaaaagtcccccaatgcttaga 624

                                                                       
Query: 425 aaaatcttctactcttacagtttagggactataaaaaccctacttctcctctgctcaggg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaaatcttctactcttacagtttagggactataaaaaccctacttctcctctgctcaggg 684

                                                                       
Query: 485 ctgacttcccaaagcctttacttagggagtggcaattgtcagatcagctgtattgtgtat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctgacttcccaaagcctttacttagggagtggcaattgtcagatcagctgtattgtgtat 744

                                                                  
Query: 545 atataatcaagcttgctataaatttggctagtttgggtagttatccttactctca 599
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atataatcaagcttgctataaatttggctagtttgggtagttatccttactctca 799


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no541_m24.g1 MSMg01no541_m24.g1 CHROMAT_FILE:
MSMg01no541_m24.g1 PHD_FILE: MSMg01no541_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:21:37 2005
         (310 letters)



>mm_chr13_42928111_42928820
          Length = 710

 Score =  574 bits (297), Expect = e-168
 Identities = 306/309 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   cacgagatttttccatctcacaagctcgagactaaagatggtgtcaaggttgttgttgct 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 cacgagatttttccatctcacaagctcgagactaaagatggtgtcaaggttgttgttgct 350

                                                                       
Query: 62  gttttagtttttcaattagcggtctggatttcctcaaatgtttactagagcctttggttt 121
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 349 gttttagtttttcaattagcggtctggatttcctcaaatgtttactcgagcctttggttt 290

                                                                       
Query: 122 atgttgaaagttagccagatagtttgaataataggaattcaaaagccaagtttccaccta 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 atgttgaaagttagccagatagtttgaataataggaattcaaaagccaagtttccaccta 230

                                                                       
Query: 182 catcactacagttaagaaagagttgtcatgctgggcggtggtggcacatgcctttaatcc 241
           |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 229 catcactacagttaagaaagagttgtcacgccgggcggtggtggcacatgcctttaatcc 170

                                                                       
Query: 242 cagcacttgggggcagaggccagcctggtctacaaagtgagttccaggtcagccagggtt 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 cagcacttgggggcagaggccagcctggtctacaaagtgagttccaggtcagccagggtt 110

                    
Query: 302 atacagaga 310
           |||||||||
Sbjct: 109 atacagaga 101


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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