BAC Information

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BAC

Clone NameMSMg01-542H16
Chromosome13 (Build37)
Map Location 79,006,886 - 79,183,196
singlet/doubletdoublet
Overlap geneEG666883
Upstream gene1110033M05Rik, 1700013G10Rik, Nr2f1, EG666856, LOC268676, LOC100042683, LOC622365, LOC100043052
Downstream geneLOC666925
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-542H16.T7 (MSMg01no542_h16.b1)MSMg01-542H16.TJ (MSMg01no542_h16.g1)
ACCAG608244AG608245
length756762
length of high quality
(start - end)		651 (53 - 703)670 (78 - 747)
definitionCHROMAT_FILE: MSMg01no542_h16.b1 PHD_FILE: MSMg01no542_h16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:31 2005CHROMAT_FILE: MSMg01no542_h16.g1 PHD_FILE: MSMg01no542_h16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:22:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,182,838 - 79,183,196)(79,006,886 - 79,007,555)
sequence
NTTTTAACCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACTGTTTGCTTTTGCAGTTTTACATTCAGTGACACACT
TTTTTTTTAATACGTTCTTTTCTCATATACTACATTCTGGTCACGATCCT
TTGCTCTTCTCAGCTCCCTTCCACATACCTCCCTTTTACGCCAAATCTAC
TCTCCCTTCACTTCCTCTTCAGAAAAGAGCAGATCTCCAAGAGAAGACAG
CCCAACGGGACCAAACAAGATACAATAAGACAAGGTAAAAGTCCTCATAC
CAATGCTGGACAAGGCAACCCAATAAGAGGAAAAGAATCCCAAAACCAGG
CTAAAAACTGAGAGACACAGCTGCTTCCACTCTTAGGAGTTCCGTGAAAA
CACAAAGCTACCAGCCTGCATATAGGCTATGCAGATGACCTGCGCAGACC
ACACAGTGCAGGTGCGTCAGTTACAGTTTCTGAGAGTCCATGTGAGGCTG
CATAGTTGAGTTAGAGCACTCTGTTGTCTTGGTGTCCTCCTTCCAGTGGG
ACACCTTTTAGTTGCTTATAATATTTCTTATTTTGGTGAATTTCTCAAAT
ATACTTTAAAAGAATGAATATGCATGCTACAATATTGGAGAGAACATTCT
ATAACTGTTGAGAAAAATGCATTGCCACTCAAATTTTTTGTCTTAATTAT
GTTTTTGTATTGATGAGCACTTCCTTTTTTTTCCATTTTTTTCTTTTTTT
TTTTTN

NACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTTGACATGATTGCACTGAGCT
ATGATGTCATCTTGTTCTCTACTTTTTGCTATAGTTTTAGACACTTATTT
AATGTACTTTGTTATTATATTTTACATTTAATTAAAATAACATTTTATTA
TTTTTAATTTTGATACAATTAAATATATTAAAACATTAATTTTAATATAG
TCTAATAATATCAAAACAGAAAGAAAATGTAATTCAATTAATTTTACTAT
CTTCTTCCTGATAAAACTATCAGTGGAAACAATCTGATAGTTGGCAATTT
TCCTGTGTTTATCTTAGGCTGTTTTAATTTATTTATTATGTTTCTAAGCA
CATTTCTTCTTTGGAAAATGTCGTTATTTTTAATAATAATGAATGAAATT
TAAACTCCAGAAAACCATTATATTGCATAGAGAGAAAGAAAAGAGAATGT
AAATTTATTTCTTCTACATCAACCTGACACAAGCAACTAGATGCCTCACA
TGGTGAAAACTCTGTGGGACATTTTTCATGTTGCTGGAAAAAGAAACTTG
TCTTTCTCCATCTACTTGCAGCTGAAATATGTGAGTTTACTCATGGGACC
CAGTCATTTGGCAATGAGAATCTGATAATCTTATAATTCATAAAATGAGT
TAAGAACTTAAATTTTTTTCAGTATTAGTCAAGAAAATCTGACTGGTGGG
TCCAAGAGATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no542_h16.b1 MSMg01no542_h16.b1 CHROMAT_FILE:
MSMg01no542_h16.b1 PHD_FILE: MSMg01no542_h16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:31 2005
         (651 letters)



>mm_chr13_79182146_79183196
          Length = 1051

 Score =  640 bits (331), Expect = 0.0
 Identities = 352/359 (98%)
 Strand = Plus / Minus

                                                                        
Query: 293  accaggctaaaaactgagagacacagctgcttccactcttaggagttccgtgaaaacaca 352
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1051 accaggctaaaaactgagagacacagctgcttccactcttaggagttccatgaaaacaca 992

                                                                        
Query: 353  aagctaccagcctgcatataggctatgcagatgacctgcgcagaccacacagtgcaggtg 412
            |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 991  aagctaccagcctgtatataggctatgcaggtgacctgcgcagaccacacagtgcaggtg 932

                                                                        
Query: 413  cgtcagttacagtttctgagagtccatgtgaggctgcatagttgagttagagcactctgt 472
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 931  cgtcagttacagtttctgagagcccatgtgaggctgcatagttgagttagagcactctgt 872

                                                                        
Query: 473  tgtcttggtgtcctccttccagtgggacaccttttagttgcttataatatttcttatttt 532
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 871  tgtcttggtgtcctccttccagtgggacaccttttagttgcttataatattgcttatttt 812

                                                                        
Query: 533  ggtgaatttctcaaatatactttaaaagaatgaatatgcatgctacaatattggagagaa 592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811  ggtgaatttctcaaatatactttaaaagaatgaatatgcatgctacaatattggagagaa 752

                                                                       
Query: 593  cattctataactgttgagaaaaatgcattgccactcaaattttttgtcttaattatgtt 651
            |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 751  cattctataactgttgaggaaaatgcattgccacttaaattttttgtcttaattatgtt 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no542_h16.g1 MSMg01no542_h16.g1 CHROMAT_FILE:
MSMg01no542_h16.g1 PHD_FILE: MSMg01no542_h16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:32 2005
         (670 letters)



>mm_chr13_79006686_79007755
          Length = 1070

 Score = 1272 bits (658), Expect = 0.0
 Identities = 667/670 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttgacatgattgcactgagctatgatgtcatcttgttctctactttttgctatagttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttgacatgattgcactgagctatgatgtcatcttgttctctactttttgctatagttt 260

                                                                       
Query: 61  tagacacttatttaatgtactttgttattatattttacatttaattaaaataacatttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagacacttatttaatgtactttgttattatattttacatttaattaaaataacatttta 320

                                                                       
Query: 121 ttatttttaattttgatacaattaaatatattaaaacattaattttaatatagtctaata 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatttttaattttgatacaatttaatatattaaaacattaattttaatatagtctaata 380

                                                                       
Query: 181 atatcaaaacagaaagaaaatgtaattcaattaattttactatcttcttcctgataaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatcaaaacagaaagaaaatgtaattcaattaattttactatcttcttcctgataaaac 440

                                                                       
Query: 241 tatcagtggaaacaatctgatagttggcaattttcctgtgtttatcttaggctgttttaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatcagtggaaacaatctgatagttggcaattttcctgtgtttatcttaggctgttttaa 500

                                                                       
Query: 301 tttatttattatgtttctaagcacatttcttctttggaaaatgtcgttatttttaataat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttatttattatgtttctaagcacatttcttctttggaaaatgtcgttatttttaataat 560

                                                                       
Query: 361 aatgaatgaaatttaaactccagaaaaccattatattgcatagagagaaagaaaagagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatgaatgaaatttaaactccagaaaaccattatattgcatagagagaaagaaaagagaa 620

                                                                       
Query: 421 tgtaaatttatttcttctacatcaacctgacacaagcaactagatgcctcacatggtgaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtaaatttatttcttctacatcaacctgacacaagcaactagatgcctcacatggtgaa 680

                                                                       
Query: 481 aactctgtgggacatttttcatgttgctggaaaaagaaacttgtctttctccatctactt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aactctgtgggacatttttcatgttgctggaaaaagaaacttgtctttctccatctactt 740

                                                                       
Query: 541 gcagctgaaatatgtgagtttactcatgggacccagtcatttggcaatgagaatctgata 600
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 741 gcagctgaaatatgtgagtttactcatgggacccagtcatttagcaatgagaatctgata 800

                                                                       
Query: 601 atcttataattcataaaatgagttaagaacttaaatttttttcagtattagtcaagaaaa 660
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 801 atcttataattcataaaatgagttaagaacttaaaattttttcagtattagtcaagaaaa 860

                     
Query: 661 tctgactggt 670
           ||||||||||
Sbjct: 861 tctgactggt 870


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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