NCTCATTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCATGTGGCAATATCTTCCTGATCCAGCCTGACTCTGAGGTTTGC
TTTTCCCTTAGAGAATATCCCTTCTTCCAGCCCTAGCCTCCGCATCACTT
ATCATTCTTTCCAATGATTTCAGTTTAACCTTAAGTTTTGGGCTACCCAT
CTGCCAGACAGCAAGTGTTTGTTGACATGTCAGGAGGTTCTGTTAAACCA
CACAGTCCCACCCTGTCCTCAAGATCGCTCCAGCAGTACTTTCTTTTCAA
GTCTTACTCTGGTCCTTTCCCCAGGTCTACTCCCAGGATGGCCTGTGCTG
AGCCATCAATTTTTATAGCATATTGGTTGTCTCTGTTAGTGTTCTTTATA
GTGAAACTTGCTCATCCCACCTGTCTAGAACACACCTACCAACTAGGAAC
CTGGCCCTGAGGGACTCTCCTAGGGCTACCTTTATATACCTCCCTGGACC
CAGCTTCTTGCCGATTTATAATTTCATTGCTACTGTGCTTTATTCACAGG
GAATCAGAATATTGTTAGACTCCCAGATATTGGGTATGACCTGAAACAAT
AGTGTGCCCTCAGCAGACGTGCATGCGCGCGCGTGCCCNTACNCNCACAC
ACACACACACACACACACCGGGGGGGGGGGAGAGAGAATAAAATAANNNN
NNNNCNAATGTTTTTTTAAAAAAAAACCTTTCCTTTTCTAAAGGTAAAAA
CTAATTTATCGATGGA

NGCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCACATAAAACCAAAGAAATTGAA
ATTAATAGAGGAGAAAGTGAAGGAAAGCCTCAAAGATATGGGCACAGGAG
AAAAATTCCTAAACAGAACAGCAATGGCTTGTGCTGTAAGATCAAGAATT
GACATATGGGACCTCATAAAATTGCAAAGCTCCTGTAAGGCAAAAGACAT
TGTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATGTTTACCA
ATCCTAAATCTGATAGGGGACTAATATCCAATATATTCAAAGAGCTCAAG
AAGTTGAACTCCAGAAATTCAAATAACCCCATTAAAAATGGGGTACAGAG
CTAAACAAAGAATTCTCAACTGAGGAATACTGAATAGCTGAGAAGCACCT
GAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAACAAC
CCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATGAAAAATTCAG
GTGACAGCAGATGCTGGAAAGGATGTGGAGAAAGAGGAGCACTCCNTCAT
TGCTGGTGGGATTGCAAAACTGTACAACCACTCTGGNAATCAGTCTCGAG
GNTCTCAGAAAAATNGACATAATANTACCGGAAGATCCAGCATACCTCTT
CTANGCATATACCTAGAAAAAGTTCCAACTGGCATTTAGAAAACATGCTC
CAT

Query= MSMg01no542_l15.b1 MSMg01no542_l15.b1 CHROMAT_FILE:
MSMg01no542_l15.b1 PHD_FILE: MSMg01no542_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:22:51 2005
         (512 letters)



>mm_chr13_19856136_19857043
          Length = 908

 Score =  901 bits (466), Expect = 0.0
 Identities = 497/508 (97%), Gaps = 4/508 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatgtggcaatatcttcctgatccagcctgactctgaggtttgcttttccctta 64
           |||||||||||||||||||||| |  ||| ||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatgtggcaatatcttgc--atc-agcctgactctgaggtttgcttttccctta 261

                                                                       
Query: 65  gagaatatcccttcttccagccctagcctccgcatcacttatcattctttccaatgattt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gagaatatcccttcttccagccctagcctccgcatcacttatcattctttccaatgattt 321

                                                                       
Query: 125 cagtttaaccttaagttttgggctacccatctgccagacagcaagtgtttgttgacatgt 184
           |||||||||||||||| |||||||| ||||||| ||||||| ||||||||||||||||||
Sbjct: 322 cagtttaaccttaagtattgggctagccatctggcagacagtaagtgtttgttgacatgt 381

                                                                       
Query: 185 caggaggttctgttaaaccacacagtcccaccctgtcctcaagatcgctccagcagtact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 caggaggttctgttaaaccacacagtcccaccctgtcctcaagatcgctccagcagtact 441

                                                                       
Query: 245 ttcttttcaagtcttactctggtcctttccccaggtctactcccaggatggcctgtgctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttcttttcaagtcttactctggtcctttccccaggtctactcccaggatggcctgtgctg 501

                                                                       
Query: 305 agccatcaatttttatagcatattggttgtctctgttagtgttctttatagtgaaacttg 364
           ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 502 agccatcaatttt-atagcatattggttgtctctgttagtgttcttgatagtgaaacttg 560

                                                                       
Query: 365 ctcatcccacctgtctagaacacacctaccaactaggaacctggccctgagggactctcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcatcccacctgtctagaacacacctaccaactaggaacctggccctgagggactctcc 620

                                                                       
Query: 425 tagggctacctttatatacctccctggacccagcttcttgccgatttataatttcattgc 484
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 tagggctacctttatatacctccctggacccagcttcttgccgatttatattttcattgc 680

                                       
Query: 485 tactgtgctttattcacagggaatcaga 512
           ||||||||||||||||||||||||||||
Sbjct: 681 tactgtgctttattcacagggaatcaga 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 908
Length adjustment: 10
Effective length of query: 502
Effective length of database: 898
Effective search space:   450796
Effective search space used:   450796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)