BAC Information

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BAC

Clone NameMSMg01-543F19
Chromosome13 (Build37)
Map Location 116,689,782 - 116,690,350
singlet/doubletsinglet
Overlap genenone
Upstream geneItga2, LOC100040975, Itga1, Pelo, LOC100041023, LOC547402, LOC100041045
Downstream geneEG623174, Isl1, EG668276, Gm280, LOC100041169, Parp8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543F19.T7 (MSMg01no543_f19.b1)MSMg01-543F19.TJ (MSMg01no543_f19.g1)
ACCAG608915AG608916
length759755
length of high quality
(start - end)
569 (143 - 711)---
definitionCHROMAT_FILE: MSMg01no543_f19.b1 PHD_FILE: MSMg01no543_f19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:42 2005CHROMAT_FILE: MSMg01no543_f19.g1 PHD_FILE: MSMg01no543_f19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:23:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTGGATTGTATGTTTTGTATTCTAGATCTACCTGAACACCCAGC
TATACCACTCTTGGGAATATATGAAATAGATGGTCCACCATGCCACAGGG
GCATGTGTTCTATTATGTTCATATCGGGCTTATTTGTGATAGCCAGAAGC
TGGAAACAACCTAGATGTCGCACTACAGTAGAATTTATACAGAAAATCTG
TTTCATTTATACAATGGAATACTACTCAGCTGTTAAGAACGAGGACATCC
TGACTTTTGAAGACAAATGGAAAATATTACTCTGAGTGAGGTAACTCAGA
CTCAAAAGGACATGCATGTTATGTACTCACTAATAAATGGATATTAGCTA
CACACACACAAAATCCCTAGCTATTCTTAGTCAGTGTAAGTTTCTAGAGT
CCCAGAGATATTACTCATTGTGATTATAATTTTAATCACTGGAAATTTCT
AATCCCTCCCAGGGAGTTTCTAGATTCTTCCTATGGAATTAAAGTCCCCA
ATATTTCTCAAGAAATATTGTCAATAATAGTCCCCATGTATAAAGATGAC
AGCTAGACATTAAGTTTTGGCTAGAATATTTGGAGAAGCATAACATTACT
ATAGGACATATGATGACTCATTAGATGCTTCTGGTTCAAGTAACTGACTC
GCAACTCTTCTACGATCAGTCCACTTGGNCTTCAGTTTGGCTCTGACTCT
CATCATGCA
CAATGCATTGCGTAGACTGGCGTCGCCTGGTCTTCTACTTTACGTGAACT
ATCGAATGATACTGCGGATTCACACTACAAGATGTCATGTCTTATGATCA
TATCAGAGTGATATCTATGAATGCGACACAATAAATGTATAAGCTAACAT
CGATTACAGATATAACCAACAGTGAGGAATCTGTTTCATGATCTATCTAC
TCACTGTCATGCTTTGAACGTGCTTGGTTCATGGAGTGACACTAGTAAGA
CGTGAGGCTTTGTTGAAATATGTGTGTCACTGTGGCTATTGGCTTTAATA
CCCTATCCCTTGCTGCCTATAATGGAATATTCTCCTCATAGCCTTCACAT
GAATACATATAACTCTCATATTCTCCTGAAATATATCTGCCTGGATGCTG
CCATGTTCTCACCTTGATGATACTGGACTGAACCTCTGAACCTGTAAGGG
AGCCCCAATTACATGTCTATAGAAGAGTTGCACTTGGTCATGGTGTCTGC
TCACGACAGTAAAACCCCTACCAAGACACTCCGCTATCAAGTTACTGAAG
AAACATATTTCAAAGATCATGATGAATGCTATCATATGCATATGAATATT
TTTGACAGACGCAAGAGAAACTCCCTGATAGTGGATAAATTTGAGGCGTT
CTACTCCTCATGCCAGATGATCCCAGATTAAGAACAACGAGTGATTAATA
GAATGGAGTGTAATTCAAGATATCAACTCATTTGCTTTACATAAGAGATT
CTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_f19.b1 MSMg01no543_f19.b1 CHROMAT_FILE:
MSMg01no543_f19.b1 PHD_FILE: MSMg01no543_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:42 2005
         (569 letters)



>mm_chr13_116689582_116690550
          Length = 969

 Score = 1077 bits (557), Expect = 0.0
 Identities = 566/569 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccacaggggcatgtgttctattatgttcatatcgggcttatttgtgatagccagaagctg 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 ccacaggggcatgtgttctattatgttcatattgggcttatttgtgatagccagaagctg 260

                                                                       
Query: 61  gaaacaacctagatgtcgcactacagtagaatttatacagaaaatctgtttcatttatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaacaacctagatgtcgcactacagtagaatttatacagaaaatctgtttcatttatac 320

                                                                       
Query: 121 aatggaatactactcagctgttaagaacgaggacatcctgacttttgaagacaaatggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatggaatactactcagctgttaagaacgaggacatcctgacttttgaagacaaatggaa 380

                                                                       
Query: 181 aatattactctgagtgaggtaactcagactcaaaaggacatgcatgttatgtactcacta 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 aatattactctgagtgaggtaactcagactcaaaaagacatgcatgttatgtactcacta 440

                                                                       
Query: 241 ataaatggatattagctacacacacacaaaatccctagctattcttagtcagtgtaagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataaatggatattagctacacacacacaaaatccctagctattcttagtcagtgtaagtt 500

                                                                       
Query: 301 tctagagtcccagagatattactcattgtgattataattttaatcactggaaatttctaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctagagtcccagagatattactcattgtgattataattttaatcactggaaatttctaa 560

                                                                       
Query: 361 tccctcccagggagtttctagattcttcctatggaattaaagtccccaatatttctcaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccctcccagggagtttctagattcttcctatggaattaaagtccccaatatttctcaag 620

                                                                       
Query: 421 aaatattgtcaataatagtccccatgtataaagatgacagctagacattaagttttggct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatattgtcaataatagtccccatgtataaagatgacagctagacattaagttttggct 680

                                                                       
Query: 481 agaatatttggagaagcataacattactataggacatatgatgactcattagatgcttct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 681 agaatatttggagaagcataacattactataggacatatgatgactcatcagatgcttct 740

                                        
Query: 541 ggttcaagtaactgactcgcaactcttct 569
           |||||||||||||||||||||||||||||
Sbjct: 741 ggttcaagtaactgactcgcaactcttct 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)