Query= MSMg01no543_k04.b1 MSMg01no543_k04.b1 CHROMAT_FILE:
MSMg01no543_k04.b1 PHD_FILE: MSMg01no543_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:04 2005
(296 letters)
>mm_chr13_43059835_43060530
Length = 696
Score = 503 bits (260), Expect = e-147
Identities = 289/302 (95%), Gaps = 6/302 (1%)
Strand = Plus / Plus
Query: 1 ctgttgaaggttagtcagatcgcaaagctgcccggtttgctttaacttggtgtttttgca 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 201 ctgttgaaggttagtcagatcgcaaagctgcccagtttgctttaacttggtgtttgtgca 260
Query: 61 ccaagggaaatcgaaacatccacggagtgattggaagccagagaaatggcatttcacaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaagggaaatcgaaacatccacggagtgattggaagccagagaaatggcatttcacaca 320
Query: 121 tggtgggccccatgcttaggaaagacaaatatccaggtaactgccagagtcaggttccag 180
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 tggtggggcccatgcttaggaaagacaaatatccaggtaactgtcagagtcaggttccag 380
Query: 181 taagaagacgtcccatcaagtccagt------aactgtcagcatctggctgggtcacacg 234
|||||||||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct: 381 taagaagacgtcccatcaagtccagtcccatcaagtctcagcatctggctgggtcacacg 440
Query: 235 ttccccgtgagtgcttgtggggaacatcccatctggtttgatcctcagtactaaaaatag 294
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 ttccccgtgagtgcttgtggggaacatcccatctggtttgatcctcagtgctaaaaatag 500
Query: 295 at 296
||
Sbjct: 501 at 502
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space: 197169
Effective search space used: 197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no543_k04.g1 MSMg01no543_k04.g1 CHROMAT_FILE:
MSMg01no543_k04.g1 PHD_FILE: MSMg01no543_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:04 2005
(514 letters)
>mm_chr13_43237881_43238792
Length = 912
Score = 917 bits (474), Expect = 0.0
Identities = 502/512 (98%), Gaps = 2/512 (0%)
Strand = Plus / Minus
Query: 3 gtagctctgctgtcctatgtcctgtcagcttctgtcccctggcctgtgaaatggggacca 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gtagctctgctgtcctatgtcctgtcagcttctgtcccctggcctgtgaaatggggacca 567
Query: 63 aggacagaggtgaccagcacagtgtcccagtacagagctttgtacagggctgcatgagac 122
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 566 aggacagaggtgaccagcacagtgtcccagcacagagctttgtgcagggctgcatgagat 507
Query: 123 tcttatctcatgggggccacaaaagagcctcacctccttcctaacagagggctggtgagg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 506 tcttatctcatgggggccacaaaagagcctcacctccttcctaacagagggctggcgagg 447
Query: 183 ctaaaccaggcccagatgagaaaaaaaatgtcatagtgcctggtccagtggatacctgct 242
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ctaaaccaggcccagatgag--aaaaaatgtcatagtgcctggtccagtggatacctgct 389
Query: 243 taggacagtggttgtggcctgaagcctgtctgcttttccttgtggcctgggcttggattt 302
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 388 taggacagtggttgtagcctgaagcctgtctgcttttccttgtggccagggcttggattt 329
Query: 303 taatttgtgatatgattgtagttgtaccagtatgggcacaaagacctccaagtcagctgt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 taatttgtgatatgattgtagttgtaccagtatgggcacaaagacctccaagtcagctgt 269
Query: 363 cctaaacatggaaactatgtatggtgcccttgctgctgggttttgtttgattgtttgatt 422
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 268 cctaaacatggaaactatgtatggtgcccttgctgctgggctttgtttgattgtttgatt 209
Query: 423 gattggtttttggtagtactaaagatggaacccagggcctcttacatgttaggcaaagcc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gattggtttttggtagtactaaagatggaacccagggcctcttacatgttaggcaaagcc 149
Query: 483 cactgcactttatcctttcattctgggaacag 514
||||||||| ||||||||||||||||||||||
Sbjct: 148 cactgcactctatcctttcattctgggaacag 117
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 912
Length adjustment: 10
Effective length of query: 504
Effective length of database: 902
Effective search space: 454608
Effective search space used: 454608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
