Query= MSMg01no543_m21.b1 MSMg01no543_m21.b1 CHROMAT_FILE:
MSMg01no543_m21.b1 PHD_FILE: MSMg01no543_m21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:17 2005
(629 letters)
>mm_chr13_37944531_37945563
Length = 1033
Score = 1081 bits (559), Expect = 0.0
Identities = 598/630 (94%), Gaps = 30/630 (4%)
Strand = Plus / Minus
Query: 4 ggaattcctaggtgtttcagacttcaaaacaaactaaaaccctaagatatcaatcacaac 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ggaattcctaggtgtttaagacttcaaaacaaactaaaaccctaagatatcaatcacaac 569
Query: 64 ccatttctatcttaaaaaaaaaacaactgtaattatacctacaaaggcgatggaggtcct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ccatttctatcttaaaaaaaaaacaactgtaattatacctacaaaggcgatggaggtcct 509
Query: 124 gctgtggagataccctcccacttgaacctcagccagaaccaaacttgctctggaatttct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gctgtggagataccctcccacttgaacctcagccagaaccaaacttgctctggaatttct 449
Query: 184 aaactaagtttggagggtttccccatgagaccttcatgaggtcactgtgcaccctagtga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aaactaagtttggagggtttccccatgagaccttcatgaggtcactgtgcaccctagtga 389
Query: 244 ctaggcctctagttgggcagaggagccttcctcacagctgagtttaccagcacaggtgca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ctaggcctctagttgggcagaggagccttcctcacagctgagtttaccagcacaggtgca 329
Query: 304 ctgtgtaggcggtcacaagttcttcaactgaggtctggcagaccctcaggtcacctg--- 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ctgtgtaggcggtcacaagttcttcaactgaggtctggcagaccctcaggtcacctgcta 269
Query: 361 -ctacctcctttacaagatccacttcccccaattatccctgcctggatttgaccatttgt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cctacctcctttacaagatccacttcccccaattatccctgcctggatttgacca----- 214
Query: 420 ggaccagttaggaatactggctttctggacccggtactttctcaggctcatctgataagt 479
|||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ---------------------tttctggacccggtactttctcaggctcatctgataagt 175
Query: 480 tcttactgtcaattttactttgctaagctgccacctaaagttccgagaacaacatggaaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 tcttactgtcaattttactttgctaagctgccacctaaagttccgagaacaacatggaaa 115
Query: 540 gattataaaggcttgaaatagagacacattaaatgttttggagcacatacagacccgcct 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 gattataaaggcttgaaatagagacacattaaatgttttggagcacatacagacccgcct 55
Query: 600 aanatgtaaacagcatacctgcttccggcc 629
|| |||||||||||||||||||||||||||
Sbjct: 54 aaaatgtaaacagcatacctgcttccggcc 25
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1033
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1023
Effective search space: 633237
Effective search space used: 633237
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_m21.g1 MSMg01no543_m21.g1 CHROMAT_FILE:
MSMg01no543_m21.g1 PHD_FILE: MSMg01no543_m21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:17 2005
(602 letters)
>mm_chr13_37785740_37786737
Length = 998
Score = 1056 bits (546), Expect = 0.0
Identities = 588/606 (97%), Gaps = 8/606 (1%)
Strand = Plus / Plus
Query: 1 cacgatgctcaagtgtcttatataaaatgacattgtatttgcccaggatgttccacacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 cacgatgctcaagtgtcttatataaaatgacattgtatttgcccaggatgttccacacac 256
Query: 61 ttttagtccccgctggagagcttagaacacctcattcaatgtgtgtccagaagctgtact 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttttagtcaccgctggagagcttagaacacctcattcaatgtgtgtccagaagctgtact 316
Query: 121 gtattgcttaggggatagacacactaaaagtatcctatgtatgtttcatacagatacaaa 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gtatcgcttaggggatagacacactaaaagtatcctatgtatgtttcatacagatacaaa 376
Query: 181 tagatcctttgggcttttggatttgttttcaaatagtatgaatcacagttggttgagtcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tagatcctttgggcttttggatttgttttcaaatagtatgaatcacagttggttgagtcc 436
Query: 241 tcagagacgacagatacagacagcgccctgagccgggcagtggtggcacatgcctgtaat 300
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 437 tcagagacaacagatacagacagcgccctgagccgggcagtggtggcgcatgcctgtaat 496
Query: 301 tccagcacttgggaggcagagacaggcagattgctgagttcgaggccagcatggtctaca 360
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 497 tccagtacttgggaggcagagacaggcagattgctgagttcgaggccagcctggtctaca 556
Query: 361 gagtgagttccaggacagccaggactacacagagaaaccctgtctcaaaaaacaaaaaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gagtgagttccaggacagccaggactacacagagaaaccctgtctcaaaaaacaaaaaca 616
Query: 421 aacaaac----gagagcgccctgtaacctgccattgcatagggcagagttcaaaagaggt 476
||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 617 aacaaacaaacgagagcgccctgtaacctgccgttgcatagggcagagttcaaaagaggt 676
Query: 477 gggtggaggctgaggaagggggcttcgctctctactgggtccctcactgcacttctgcag 536
|| ||| |||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 677 gg----aggttgaggaagggggcttcgctctctactgggtccctcactgcgcttccgcag 732
Query: 537 aggcccactgagcatgcaggggcaaactgcaattgacacttgtgagtatttttaattgcc 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 aggcccactgagcatgcaggggcaaactgcaattgacacttgtgagtatttttaattgcc 792
Query: 597 ccccag 602
||||||
Sbjct: 793 ccccag 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 998
Length adjustment: 10
Effective length of query: 592
Effective length of database: 988
Effective search space: 584896
Effective search space used: 584896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|