BAC Information

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BAC

Clone NameMSMg01-543M21
Chromosome13 (Build37)
Map Location 37,785,936 - 37,945,158
singlet/doubletdoublet
Overlap geneRreb1
Upstream geneNrn1, F13a1, Ly86, LOC100042794, LOC100042800, LOC100042802, LOC100041624
Downstream geneSsr1, Cage1, Riok1, Dsp, 6530403A03Rik, Bmp6, Txndc5, Muted, Eef1e1, LOC621102
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543M21.T7 (MSMg01no543_m21.b1)MSMg01-543M21.TJ (MSMg01no543_m21.g1)
ACCAG609254AG609255
length752752
length of high quality
(start - end)
629 (49 - 677)602 (82 - 683)
definitionCHROMAT_FILE: MSMg01no543_m21.b1 PHD_FILE: MSMg01no543_m21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:17 2005CHROMAT_FILE: MSMg01no543_m21.g1 PHD_FILE: MSMg01no543_m21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,944,555 - 37,945,158)(37,785,936 - 37,786,537)
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTAGGTGTTTCAGACTTCAAAACAAACTAAAACCCTAAGATA
TCAATCACAACCCATTTCTATCTTAAAAAAAAAACAACTGTAATTATACC
TACAAAGGCGATGGAGGTCCTGCTGTGGAGATACCCTCCCACTTGAACCT
CAGCCAGAACCAAACTTGCTCTGGAATTTCTAAACTAAGTTTGGAGGGTT
TCCCCATGAGACCTTCATGAGGTCACTGTGCACCCTAGTGACTAGGCCTC
TAGTTGGGCAGAGGAGCCTTCCTCACAGCTGAGTTTACCAGCACAGGTGC
ACTGTGTAGGCGGTCACAAGTTCTTCAACTGAGGTCTGGCAGACCCTCAG
GTCACCTGCTACCTCCTTTACAAGATCCACTTCCCCCAATTATCCCTGCC
TGGATTTGACCATTTGTGGACCAGTTAGGAATACTGGCTTTCTGGACCCG
GTACTTTCTCAGGCTCATCTGATAAGTTCTTACTGTCAATTTTACTTTGC
TAAGCTGCCACCTAAAGTTCCGAGAACAACATGGAAAGATTATAAAGGCT
TGAAATAGAGACACATTAAATGTTTTGGAGCACATACAGACCCGCCTAAN
ATGTAAACAGCATACCTGCTTCCGGCCCAGACTCTTAGAAAATAGGACAT
GGTGGAATAGGTCCCATGTAATATAGTCTTTTTACAGATAGCAAAGGACA
TN
NNNNACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACGATGCTCAAGTGTCTT
ATATAAAATGACATTGTATTTGCCCAGGATGTTCCACACACTTTTAGTCC
CCGCTGGAGAGCTTAGAACACCTCATTCAATGTGTGTCCAGAAGCTGTAC
TGTATTGCTTAGGGGATAGACACACTAAAAGTATCCTATGTATGTTTCAT
ACAGATACAAATAGATCCTTTGGGCTTTTGGATTTGTTTTCAAATAGTAT
GAATCACAGTTGGTTGAGTCCTCAGAGACGACAGATACAGACAGCGCCCT
GAGCCGGGCAGTGGTGGCACATGCCTGTAATTCCAGCACTTGGGAGGCAG
AGACAGGCAGATTGCTGAGTTCGAGGCCAGCATGGTCTACAGAGTGAGTT
CCAGGACAGCCAGGACTACACAGAGAAACCCTGTCTCAAAAAACAAAAAC
AAACAAACGAGAGCGCCCTGTAACCTGCCATTGCATAGGGCAGAGTTCAA
AAGAGGTGGGTGGAGGCTGAGGAAGGGGGCTTCGCTCTCTACTGGGTCCC
TCACTGCACTTCTGCAGAGGCCCACTGAGCATGCAGGGGCAAACTGCAAT
TGACACTTGTGAGTATTTTTAATTGCCCCCCAGAATTTATAATTTTCTGC
ATTTGGCTTTATGAGCATTTAATGANGACAGATACTGGCTACATCTGCCA
AA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_m21.b1 MSMg01no543_m21.b1 CHROMAT_FILE:
MSMg01no543_m21.b1 PHD_FILE: MSMg01no543_m21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:17 2005
         (629 letters)



>mm_chr13_37944531_37945563
          Length = 1033

 Score = 1081 bits (559), Expect = 0.0
 Identities = 598/630 (94%), Gaps = 30/630 (4%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctaggtgtttcagacttcaaaacaaactaaaaccctaagatatcaatcacaac 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ggaattcctaggtgtttaagacttcaaaacaaactaaaaccctaagatatcaatcacaac 569

                                                                       
Query: 64  ccatttctatcttaaaaaaaaaacaactgtaattatacctacaaaggcgatggaggtcct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ccatttctatcttaaaaaaaaaacaactgtaattatacctacaaaggcgatggaggtcct 509

                                                                       
Query: 124 gctgtggagataccctcccacttgaacctcagccagaaccaaacttgctctggaatttct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gctgtggagataccctcccacttgaacctcagccagaaccaaacttgctctggaatttct 449

                                                                       
Query: 184 aaactaagtttggagggtttccccatgagaccttcatgaggtcactgtgcaccctagtga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aaactaagtttggagggtttccccatgagaccttcatgaggtcactgtgcaccctagtga 389

                                                                       
Query: 244 ctaggcctctagttgggcagaggagccttcctcacagctgagtttaccagcacaggtgca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ctaggcctctagttgggcagaggagccttcctcacagctgagtttaccagcacaggtgca 329

                                                                       
Query: 304 ctgtgtaggcggtcacaagttcttcaactgaggtctggcagaccctcaggtcacctg--- 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 328 ctgtgtaggcggtcacaagttcttcaactgaggtctggcagaccctcaggtcacctgcta 269

                                                                       
Query: 361 -ctacctcctttacaagatccacttcccccaattatccctgcctggatttgaccatttgt 419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 268 cctacctcctttacaagatccacttcccccaattatccctgcctggatttgacca----- 214

                                                                       
Query: 420 ggaccagttaggaatactggctttctggacccggtactttctcaggctcatctgataagt 479
                                |||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ---------------------tttctggacccggtactttctcaggctcatctgataagt 175

                                                                       
Query: 480 tcttactgtcaattttactttgctaagctgccacctaaagttccgagaacaacatggaaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 tcttactgtcaattttactttgctaagctgccacctaaagttccgagaacaacatggaaa 115

                                                                       
Query: 540 gattataaaggcttgaaatagagacacattaaatgttttggagcacatacagacccgcct 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 gattataaaggcttgaaatagagacacattaaatgttttggagcacatacagacccgcct 55

                                         
Query: 600 aanatgtaaacagcatacctgcttccggcc 629
           || |||||||||||||||||||||||||||
Sbjct: 54  aaaatgtaaacagcatacctgcttccggcc 25


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1033
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1023
Effective search space:   633237
Effective search space used:   633237
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no543_m21.g1 MSMg01no543_m21.g1 CHROMAT_FILE:
MSMg01no543_m21.g1 PHD_FILE: MSMg01no543_m21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:17 2005
         (602 letters)



>mm_chr13_37785740_37786737
          Length = 998

 Score = 1056 bits (546), Expect = 0.0
 Identities = 588/606 (97%), Gaps = 8/606 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacgatgctcaagtgtcttatataaaatgacattgtatttgcccaggatgttccacacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 cacgatgctcaagtgtcttatataaaatgacattgtatttgcccaggatgttccacacac 256

                                                                       
Query: 61  ttttagtccccgctggagagcttagaacacctcattcaatgtgtgtccagaagctgtact 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttttagtcaccgctggagagcttagaacacctcattcaatgtgtgtccagaagctgtact 316

                                                                       
Query: 121 gtattgcttaggggatagacacactaaaagtatcctatgtatgtttcatacagatacaaa 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gtatcgcttaggggatagacacactaaaagtatcctatgtatgtttcatacagatacaaa 376

                                                                       
Query: 181 tagatcctttgggcttttggatttgttttcaaatagtatgaatcacagttggttgagtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tagatcctttgggcttttggatttgttttcaaatagtatgaatcacagttggttgagtcc 436

                                                                       
Query: 241 tcagagacgacagatacagacagcgccctgagccgggcagtggtggcacatgcctgtaat 300
           |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 437 tcagagacaacagatacagacagcgccctgagccgggcagtggtggcgcatgcctgtaat 496

                                                                       
Query: 301 tccagcacttgggaggcagagacaggcagattgctgagttcgaggccagcatggtctaca 360
           ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 497 tccagtacttgggaggcagagacaggcagattgctgagttcgaggccagcctggtctaca 556

                                                                       
Query: 361 gagtgagttccaggacagccaggactacacagagaaaccctgtctcaaaaaacaaaaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gagtgagttccaggacagccaggactacacagagaaaccctgtctcaaaaaacaaaaaca 616

                                                                       
Query: 421 aacaaac----gagagcgccctgtaacctgccattgcatagggcagagttcaaaagaggt 476
           |||||||    ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 617 aacaaacaaacgagagcgccctgtaacctgccgttgcatagggcagagttcaaaagaggt 676

                                                                       
Query: 477 gggtggaggctgaggaagggggcttcgctctctactgggtccctcactgcacttctgcag 536
           ||    ||| |||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 677 gg----aggttgaggaagggggcttcgctctctactgggtccctcactgcgcttccgcag 732

                                                                       
Query: 537 aggcccactgagcatgcaggggcaaactgcaattgacacttgtgagtatttttaattgcc 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 aggcccactgagcatgcaggggcaaactgcaattgacacttgtgagtatttttaattgcc 792

                 
Query: 597 ccccag 602
           ||||||
Sbjct: 793 ccccag 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 998
Length adjustment: 10
Effective length of query: 592
Effective length of database: 988
Effective search space:   584896
Effective search space used:   584896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)