Query= MSMg01no544_d20.b1 MSMg01no544_d20.b1 CHROMAT_FILE:
MSMg01no544_d20.b1 PHD_FILE: MSMg01no544_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:50 2005
(609 letters)
>mm_chr8_31741258_31742266
Length = 1009
Score = 1054 bits (545), Expect = 0.0
Identities = 551/553 (99%)
Strand = Plus / Minus
Query: 4 ggaattcatgatctattcgctggtttttatccatggtgtttcccttactaatcatttgaa 63
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ggaattcatgatctatgagctggtttttatccatggtgtttcccttactaatcatttgaa 494
Query: 64 tgcatccccctcctcaccccaacctataaagttgttttgccttgaaacctggtaggtact 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tgcatccccctcctcaccccaacctataaagttgttttgccttgaaacctggtaggtact 434
Query: 124 tatcactttatttatttagttttatagaatctgctaccttcagacagcagatctttgtgg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tatcactttatttatttagttttatagaatctgctaccttcagacagcagatctttgtgg 374
Query: 184 ttggttaattgatccctctctcctaccatagtcttaactttgcaagcaaaagtactccac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ttggttaattgatccctctctcctaccatagtcttaactttgcaagcaaaagtactccac 314
Query: 244 ttgttgctttatctctaaaatgcttgacccatgtgaggggctcaataagatttcttgtgt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttgttgctttatctctaaaatgcttgacccatgtgaggggctcaataagatttcttgtgt 254
Query: 304 gaataaattactaatattagtgagtggtgatgaagttcttggctaatacaacacacacac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gaataaattactaatattagtgagtggtgatgaagttcttggctaatacaacacacacac 194
Query: 364 acacacacacacacacacacacacacacacacacatatacagtggagaggtatggctggt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 acacacacacacacacacacacacacacacacacatatacagtggagaggtatggctggt 134
Query: 424 aaactcagaatacaaagtactgcacatgtgatgaaagcactctcctattgagctccaccc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 aaactcagaatacaaagtactgcacatgtgatgaaagcactctcctattgagctccaccc 74
Query: 484 cagcccctttatcatacttccaaatactgttactcagcatgttttcaacagactacctac 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 cagcccctttatcatacttccaaatactgttactcagcatgttttcaacagactacctac 14
Query: 544 tttgcagtcgtct 556
|||||||||||||
Sbjct: 13 tttgcagtcgtct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_d20.g1 MSMg01no544_d20.g1 CHROMAT_FILE:
MSMg01no544_d20.g1 PHD_FILE: MSMg01no544_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:50 2005
(623 letters)
>mm_chr13_117971709_117972731
Length = 1023
Score = 275 bits (142), Expect = 9e-78
Identities = 341/424 (80%), Gaps = 37/424 (8%)
Strand = Plus / Minus
Query: 3 tttgactgactt----cttgtgattaatcatgaatgggcctgacaacatctgtctttgtt 58
|||||| ||||| |||||||||| ||||||||| | ||| |||||||||||||||||
Sbjct: 686 tttgaccgacttcttgcttgtgattagtcatgaatgagtctgccaacatctgtctttgtt 627
Query: 59 tttaattaagat-atgtgttataccctgacaagatcctttccttatccatacatccttga 117
|||||||||||| | | || | ||||||||||| |||| | ||||| ||||| |||||||
Sbjct: 626 tttaattaagatga-gcgtcacaccctgacaagttcctctgcttatgcatacgtccttga 568
Query: 118 gaggctg-tccatgcccaaaggaaatggccttagtcaaatatagatact-taaacataaa 175
||| ||| || | ||| ||||||||||||||||||||| ||||||||| |
Sbjct: 567 gagactgttcta-gccggaaggaaatggccttagtcaaacatagatactgt--------- 518
Query: 176 tataagtactataaacttgccatgtaaggatttgtggtccttgtttatattcttggaatt 235
|||| || ||||||||| ||||||||||||||| ||| |||||||| |||| ||
Sbjct: 517 -----gtaccatcaacttgccacataaggatttgtggtcattgcttatattcctggactt 463
Query: 236 ggtcatgctttgtgttgcttgcctataaaagtcactgagaaaatacacttgctcactgcc 295
|||||||||||||||||||||||||| |||| |||||||| ||||||||||||| ||| |
Sbjct: 462 ggtcatgctttgtgttgcttgcctatgaaagacactgagacaatacacttgctcgctggc 403
Query: 296 atggtattcaccagtagcactcccatacctgtctc------ttgcatcttcttcctgcct 349
||||||| |||||| ||| || | ||||||| |||||||||||||||||||
Sbjct: 402 atggtatccaccagcagccct----t--ctgtctccatttcttgcatcttcttcctgcct 349
Query: 350 tccctatagtcgtcctcgct-cccccaattttggtactcacgttgactgaccagcaggct 408
| |||||| || ||||| || |||||| | |||| | || |||||||||| |||| ||
Sbjct: 348 tgcctataatcatcctcacttcccccagtcgtggttcccatgttgactgactggcag-ct 290
Query: 409 ctgg 412
||||
Sbjct: 289 ctgg 286
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
