Query= MSMg01no544_k05.b1 MSMg01no544_k05.b1 CHROMAT_FILE:
MSMg01no544_k05.b1 PHD_FILE: MSMg01no544_k05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:22 2005
(558 letters)
>mm_chr13_90639255_90640213
Length = 959
Score = 1011 bits (523), Expect = 0.0
Identities = 547/555 (98%), Gaps = 1/555 (0%)
Strand = Plus / Plus
Query: 5 gaattctcagtcctgttcttgatgatagatatcaaaatattgatggactctgcaaagcag 64
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcagtcctgaccttgatgatagatatcaaaatattgatggactctgcaaagcag 264
Query: 65 ctaagatgctccacatcctgccgtatcaaagactcagccaggatttaatcctccatgtag 124
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctaagatgcgccacatcctgccgtatcaaagactcagccaggatttaatcctccatgtag 324
Query: 125 gagagcaagcacgtcagcctcttcatcatgaagacttgctttcaactccaataaatgtta 184
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 325 gagagcaagcacgtcagcctcttcagcatgaagacttgctttcaactctaataaatgtta 384
Query: 185 aaattacatgtatgtcaacaatgaattattttaaagtgaaggttggtattacttattagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaattacatgtatgtcaacaatgaattattttaaagtgaaggttggtattacttattagt 444
Query: 245 gacaaatgcttagtttatatacctatttaaatatctgtatacctgggaccacataaacat 304
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 445 gacaaatgcttagtttatatacctatttaaatatctgtatacctgggaccacgtaaacat 504
Query: 305 tctagaggcaagggtattgcaagtgggaaatgtttaagtcctgctctcataagaacacct 364
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctagaggcaaggttattgcaagtgggaaatgtttaagtcctgctctcataagaacacct 564
Query: 365 cgcccccagctgtgataactatgtta-ccctcttttcctgctggggatgccactaaacac 423
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 565 cgcccccagctgtgataactatgttatccctcttttcctgctggggatgccactaaacac 624
Query: 424 actccaggagaggagcccggtagatgactctatttcatccaatgcatgataatgctgacc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 actccaggagaggagcccggtagatgactctatttcatccaatgcatgataatgctgacc 684
Query: 484 ttttcatcttctcaaactgtcctgtggttaacattgttgcccttcttcctggatccgcaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttttcatcttctcaaactgtcctgtggttaacattgttgcccttcttcctggatccgcaa 744
Query: 544 ctcacctcatagcct 558
|||||||||||||||
Sbjct: 745 ctcacctcatagcct 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 959
Length adjustment: 10
Effective length of query: 548
Effective length of database: 949
Effective search space: 520052
Effective search space used: 520052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_k05.g1 MSMg01no544_k05.g1 CHROMAT_FILE:
MSMg01no544_k05.g1 PHD_FILE: MSMg01no544_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:22 2005
(635 letters)
>mm_chr13_90798663_90799695
Length = 1033
Score = 1199 bits (620), Expect = 0.0
Identities = 631/636 (99%), Gaps = 4/636 (0%)
Strand = Plus / Minus
Query: 1 actctaggatggtttgaagctaagttttaaggagtggacctatgcataaagaacctgttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 actctaggatggtttgaagctaagttttaaggagtggacctatgcataaagaacctgttc 774
Query: 61 atctggttggtgacctttgatttcacaagcttaaaatcctacacacatccaaaggagcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 atctggttggtgacctttgatttcacaagcttaaaatcctacacacatccaaaggagcat 714
Query: 121 aggacctgtggaaagacatgataacctaagctgggcaaagaaccttgaaatacccccatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 aggacctgtggaaagacatgataacctaagctgggcaaagaaccttgaaatacccccatc 654
Query: 181 tcaccattcaatcggcttcttcctctaaactcccctgatagcagatgatgggggaggcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 tcaccattcaatcggcttcttcctctaaactcccctgatagcagatgatgggggaggcac 594
Query: 241 atctgagcttacagttcctggtcttctgatcagctgacaatgtaatgaagctgctctttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 atctgagcttacagttcctggtcttctgatcagctgacaatgtaatgaagctgctctttt 534
Query: 301 tgaatagatagatggtcttgaagagatgaaagcagcttgcctctgtgctttctcaatgct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tgaatagatagatggtcttgaagagatgaaagcagcttgcctctgtgctttctcaatgct 474
Query: 361 cacagaactt-ccccccccctgttcttttctgcagctaacaaagggatcccctccctccc 419
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cacagaacttcccccccccctgttcttttctgcagctaacaaagggatcccctccctccc 414
Query: 420 cagcctttcagaaaggacgtgatcaggtgtcagaatattgctatctccattttcatagag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 cagcctttcagaaaggacgtgatcaggtgtcagaatattgctatctccattttcatagag 354
Query: 480 gcactccctaaagaacactcctccccccccccaacacacacacaccattgcaaaagatgc 539
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gcactccctaaagaaca---ctccccccccccaacacacacacaccattgcaaaagatgc 297
Query: 540 cggcttgagaatagacaaatggcaacctccctcggccttgtgtcacatgtttgggccatg 599
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 cagcttgagaatagacaaatggcaacctccctcggccttgtgtcacatgtttgggccatg 237
Query: 600 agagaagggtaatcaagcatccacagacagctgtgg 635
||||||||||||||||||||||||||||||||||||
Sbjct: 236 agagaagggtaatcaagcatccacagacagctgtgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1033
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1023
Effective search space: 639375
Effective search space used: 639375
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
