Query= MSMg01no544_l23.b1 MSMg01no544_l23.b1 CHROMAT_FILE:
MSMg01no544_l23.b1 PHD_FILE: MSMg01no544_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:31 2005
(651 letters)
>mm_chr13_18221180_18222230
Length = 1051
Score = 1201 bits (621), Expect = 0.0
Identities = 642/649 (98%), Gaps = 2/649 (0%)
Strand = Plus / Plus
Query: 4 ggaattctccatgctttc-cttggccactaaggaaacggcgctctgtttttccttcacct 62
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctccatgctaacaattggccactaaggaaacggcgctctgtttttccttcacct 263
Query: 63 gatcgccgtggagccagggtaatagatggtaatctcgcctcatttcttatgttcacatta 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gatcgccgtggagccagggtaatagatggtaatctcgcctcatttcttatgttcacatta 323
Query: 123 cccctcagaagagcatggttatgaagctgtgagaataatattgtctttttttccccatag 182
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 324 cccctcagaagagcatggttatgaagctgtgagaataatattgtc-ttttttccccatag 382
Query: 183 cggtttactgacacagctgcctttgtcccctgaaagggcacataataaaaactgcctacc 242
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cgttttactgacacagctgcctttgtcccctgaaagggcacataataaaaactgcctacc 442
Query: 243 acaggaaggctcctttggtgccggataacgcggtcaatttaggacttatcaagggaaatg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acaggaaggctcctttggtgccggataacgcggtcaatttaggacttatcaagggaaatg 502
Query: 303 acacaacagctggagaatgaaactttctcccccctggctactgatccctggataaatgaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 acacaacagctggagaatgaaactttctcccccctggctactgatccctggataaatgaa 562
Query: 363 agtgttcgccaagctggagccagcatgggctaggcctggtgggagatttcagtgcagctc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agtgttcgccaagctggagccagcatgggctaggcctggtgggagatttcagtgcagctc 622
Query: 423 aatgctgcctgtggggaagtcactgctgctgcaagccttctctctattgttcttcccctc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aatgctgcctgtggggaagtcactgctgctgcaagccttctctctattgttcttcccctc 682
Query: 483 actcttcccactcagctgaaagttgctcttcctcctcctgcacagcaacccatcagtttc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 actcttcccactcagctgaaagttgctcttcctcctcctgcacagcaacccatcagtttc 742
Query: 543 agtgaatttctgctctggtcccaggactgtggtactcctctgggcttaacgctatatact 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 agtgaatttctgctctggtcccaggactgtggtactcctctgggcttaacgctatatact 802
Query: 603 ttctggatggtactaaaagaaacatttgcaccctaagtgactattttta 651
||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ttcaggatggtactaaaagaaacatttgcaccctaagtgactattttta 851
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_l23.g1 MSMg01no544_l23.g1 CHROMAT_FILE:
MSMg01no544_l23.g1 PHD_FILE: MSMg01no544_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:31 2005
(643 letters)
>mm_chr13_18392272_18393314
Length = 1043
Score = 845 bits (437), Expect = 0.0
Identities = 443/445 (99%)
Strand = Plus / Minus
Query: 199 gaatcaagacaaaaacatgaggtaaacttagattgaggacaatctataaaattcatggct 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 gaatcaagacaaaaacatgaggtaaacttagattgaggacaatctataaaattcatggct 984
Query: 259 agtgcttccctgaactttaagaccatatacaacatggaagaattaagaaattagcacaga 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 agtgcttccctgaactttaagaccatatacaacatggaagaattaagaaattagcacaga 924
Query: 319 acttagagactagacaactaactagagaatggaaacctacattggattctcagaccatag 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 acttagagactagacaactaactagagaatggaaacctacattggattctcagaccatag 864
Query: 379 ggcatctatgaaaaactgatttttaaaaaagaaagaaagtcatctgagaagtaaatagga 438
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 863 ggcatctatgaaaaactgatttttaaaaaagaaagaaagtcatccgagaagtaaatagga 804
Query: 439 agtagttcctagcaaattgttaagtccactctcaatgactttgctatagaatcaagaggt 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 agtagttcctagcaaattgttaagtccactctcaatgactttgctatagaatcaagaggt 744
Query: 499 ctccagtggcaatgaaattatagtgctaaagcaataaagagtaaaagtttgtatacttga 558
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 cttcagtggcaatgaaattatagtgctaaagcaataaagagtaaaagtttgtatacttga 684
Query: 559 aatattattggaacataaactataaggggtaaaaggaatgacatctttctatgtttacca 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aatattattggaacataaactataaggggtaaaaggaatgacatctttctatgtttacca 624
Query: 619 ctaacaactgtgacttaaatagaca 643
|||||||||||||||||||||||||
Sbjct: 623 ctaacaactgtgacttaaatagaca 599
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
