Query= MSMg01no544_m22.b1 MSMg01no544_m22.b1 CHROMAT_FILE:
MSMg01no544_m22.b1 PHD_FILE: MSMg01no544_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:36 2005
(617 letters)
>mm_chr13_23005656_23006672
Length = 1017
Score = 1110 bits (574), Expect = 0.0
Identities = 600/614 (97%), Gaps = 9/614 (1%)
Strand = Plus / Plus
Query: 4 ggaattctgttatctgctgtcactctaggttccagattgaattcttttgaagattcttta 63
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgttatctgctgtcaccctaggttccagattgaattcttttgaagattcttta 263
Query: 64 atctgacttaaagaatcttctaatctctattatatgaactataacctagcatatcatctt 123
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atctgatttaaagaatcttctaatctctattatatgaactataacctagcatatcatctt 323
Query: 124 ccagtcctctccttatctatgtttgccttctttagatctctctttaaagtggtatataaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ccagtcctctccttatctatgtttgccttctttagatctctctttaaagtggtatataaa 383
Query: 184 agtgtagtcattgctgaaaaaaattattatttctatgctgacaagcatagcaaaactata 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agtgtagtcattgctgaaaaaaattattatttctatgctgacaagcatagcaaaactata 443
Query: 244 tggaatccagatgccctgtgccattgcattttctccatttttaacatggaaaagattttt 303
|||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 444 tggaatccagatgccctgtgccattgcatttt---------taacatggaaaagattttt 494
Query: 304 atttttaatctttaattctcttcttaagtatttcccaagtatcttatcaagtctgttaac 363
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 atttttaatctttaattctattcttaagtatttcccaagtatcttatcaagtctgttaac 554
Query: 364 tgttcagcttttcctgccatttccacttacctgcacctggcatctgccactgagatagcc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tgttcagcttttcctgccatttccacttacctgcacctggcatctgccactgagatagcc 614
Query: 424 tgttacaccagcggttggctcctggctctgacctcttccaattggtctagcaggctgccc 483
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tgttacaccagcagttggctcctggctctgacctcttccaattggtctagcaggctgccc 674
Query: 484 ttgctggttctgggctggaactgttgtatgcccttccacgagatcctggcttagggacct 543
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 675 ttgctggttctgggctggaactgttgtatgcccttccacgagatcctggctcagggacct 734
Query: 544 atctcttagaataacattacagctatgaatcatttctcctcagagctctgctgtactcct 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 atctcttagaataacattacagctatgaatcatttctcctcagagctctgctgtactcct 794
Query: 604 ggcttttttttttt 617
||||||||||||||
Sbjct: 795 ggcttttttttttt 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no544_m22.g1 MSMg01no544_m22.g1 CHROMAT_FILE:
MSMg01no544_m22.g1 PHD_FILE: MSMg01no544_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:36 2005
(597 letters)
>mm_chr13_22686762_22687760
Length = 999
Score = 418 bits (216), Expect = e-121
Identities = 457/548 (83%), Gaps = 43/548 (7%)
Strand = Plus / Plus
Query: 67 caacacaa-aaaa-gattgctgctctttgctgtttagttgtgggataaaattaagatgag 124
||||| || |||| ||||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 256 caacaaaacaaaatgattgttgctctttgctgtttagttgtggaataaagttaagatgag 315
Query: 125 ctttttcaggatgtgctca-ttcatagtttgg--tac-t--ttataacaggga-ttctca 177
|| |||||||||||||| | |||| | | ||| | ||||| || ||| || ||
Sbjct: 316 ctgtttcaggatgtgct-atttcaca-----gcctacatccttatagca-ggatttttcg 368
Query: 178 agataataacaataagtgttatactgtgtggtttatagttctccacatgctgcagacata 237
|||| |||| |||| ||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 369 agatgataatgataactgttatactttgtggtttatagttctccacatgctgcagatata 428
Query: 238 caatgactgaagatgagataagt-ttgtatacaattaggtgacataatcaa------aaa 290
|||||||||||| |||||||||| || | ||| | || |||| |||||||| | |
Sbjct: 429 caatgactgaagttgagataagtatt-tttactagtaagtgatataatcaagagaccata 487
Query: 291 ac---tgtaaggatgaatccagaagggaaactttccatttaggagtaataaaggtattgt 347
|| | |||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 488 acccttataagtatgaatccaggagggaaactttccatttaggagtaataaaggtattgt 547
Query: 348 aaaagaaaacatgtgccagtacat--aaaacatggaaaagcatcagaagtga-aa---ca 401
|||||||||||||||| | ||| | |||| | ||||| ||||||||||||| || ||
Sbjct: 548 aaaagaaaacatgtgcaaatacttttaaaaaagggaaatgcatcagaagtgagaagtaca 607
Query: 402 tataaactt-tacaataccaatgagtctgttggagtcacaat-tctggcaaacatttatt 459
| ||| || || |||| || ||| ||||||||||||| ||| | ||||||| |||||||
Sbjct: 608 -a-aaa-ttata-aatatcagtgattctgttggagtcataatgt-tggcaaatatttatt 662
Query: 460 tttgtgtattttcttttgtttagttacttttgagacagag-catccctatgccaactatt 518
|||| ||||||||||||| || ||| ||||||||||||| | ||| | |||||||||||
Sbjct: 663 tttgcatattttcttttgtctaattatttttgagacagagtc-tccat-tgccaactatt 720
Query: 519 gaaaaacatttataatgacatagtctctctagtactgataatacctatgtgattcattat 578
|||||| ||||||| ||||||| |||||||||| |||||| |||||||||| ||||||||
Sbjct: 721 gaaaaatatttatactgacataatctctctagtgctgatattacctatgtgtttcattat 780
Query: 579 tgtctcca 586
||||||||
Sbjct: 781 tgtctcca 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 999
Length adjustment: 10
Effective length of query: 587
Effective length of database: 989
Effective search space: 580543
Effective search space used: 580543
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
