BAC Information

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BAC

Clone NameMSMg01-544N10
Chromosome13 (Build37)
Map Location 47,751,290 - 47,751,809
singlet/doubletsinglet
Overlap genenone
Upstream geneC78339, Nup153, Kif13a, LOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
Downstream gene4931429P17Rik, Id4, LOC667351, Zfp169, A830005F24Rik, AW456874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-544N10.T7 (MSMg01no544_n10.b1)MSMg01-544N10.TJ (MSMg01no544_n10.g1)
ACCAG610043AG610044
length751757
length of high quality
(start - end)		598 (50 - 647)562 (80 - 641)
definitionCHROMAT_FILE: MSMg01no544_n10.b1 PHD_FILE: MSMg01no544_n10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:38 2005CHROMAT_FILE: MSMg01no544_n10.g1 PHD_FILE: MSMg01no544_n10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:25:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGGTCTTCATGCTTTCAAGTGCACTATAAACCGAGCCATCT
CCCCAGACCAGCTTCAGAGGCTTTTAAAAAGGGCTTTTTGTAAGTAATTG
TTATTTAAAATTATTTTTTATTGTGCTGTACTTGGGATTGGCCCCAGCAC
TCAGGTATAATAGGCAAGCTCTCTATCGTTGAACTATGTCACTGAGTTAT
GAATGCTTTTATTATTAAGTTATATTTTATAAGTAATATAAAATATCAGA
AATAAATTATAAAATTCTTTTAAATTTGTTCTTCTATAAAATATTTCAAA
TAATTGTCACTTTCATTGATTTGTTGTTGGAAAATATCTTCTTTCTGAGA
ATGCTCGGCCCTGCTTCTCTCCTTGTTTGCCTGAGAGCGTCAGTTAGTAA
ATCATTTAACTGCCTGGGTCTGCTGCCTCACTGTGAAGCCCAAGTGTCAA
AGGAGATCATTTCTAAGTTGTTCCAGGTCGGGAAAAAATTGAATTTTTTT
CTTACTGAGTGAAAACATTAATTGTTCCTTGGTAGTAACATGTTCATACA
AAACTATGCAATGGCTTATCTACAAGTTAAATTGCACATGCTTGCCGGGG
GATGGGGGGAGGACAACATTAAAGCANTTTTACATTTGTTTTTTTCTTGA
TTAATACAATGGGTGCTTTTTTGTTCTCCAGCTGTCATATGTATAACACC
C

GGGACGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTA
TCATGAATGGGTGTTGGATTTTGTCGAATGCTTTCTCCGAGTCTAAGGAG
ATGATCACGTGTTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACGTT
GATGGATTTCCATATATTAAACCATCCCTGCATCCCTGGAATAAAAACCT
ACTTGGTTAGGATGGATGATTGTTTTAATGTGTTCTTGGATTCGGTTAGC
GAGAATTTTATTGAGTATTTTTGCATTGATATTCATAAGGGAAATTGGTC
TGGAGTTCTCTATCTTTGTTGGATCTCTCTGTGGTTTAGGTATCAGAGTA
ATTGTGGCTTCATAGAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTT
GTGGAGTAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTAAT
AGACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGAC
TATTAATGACTGCTTCTATTTCTTTAGGAGATATGGGACTGTTTAGATTG
TTAACTTGATCCTGATTTAACCTTGGTACCTGGTATCTGTCTAGAAATTC
TTCCATTTCATCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTAGA
AGGATCTGATGGTGTTTTGGATTTTCTCANGATGTGTTGGTATGTCTCCC
TTTTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no544_n10.b1 MSMg01no544_n10.b1 CHROMAT_FILE:
MSMg01no544_n10.b1 PHD_FILE: MSMg01no544_n10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:25:38 2005
         (598 letters)



>mm_chr13_47750812_47751809
          Length = 998

 Score =  998 bits (516), Expect = 0.0
 Identities = 519/520 (99%)
 Strand = Plus / Minus

                                                                       
Query: 79  aaagggctttttgtaagtaattgttatttaaaattattttttattgtgctgtacttggga 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998 aaagggctttttgtaagtaattgttatttaaaattattttttattgtgctgtacttggga 939

                                                                       
Query: 139 ttggccccagcactcaggtataataggcaagctctctatcgttgaactatgtcactgagt 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 ttggccccagcactcaggtataataggcaagctctctatcgttgaactatgtcactgagt 879

                                                                       
Query: 199 tatgaatgcttttattattaagttatattttataagtaatataaaatatcagaaataaat 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 tatgaatgcttttattattaagttatattttataagtaatataaaatatcagaaataaat 819

                                                                       
Query: 259 tataaaattcttttaaatttgttcttctataaaatatttcaaataattgtcactttcatt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 tataaaattcttttaaatttgttcttctataaaatatttcaaataattgtcactttcatt 759

                                                                       
Query: 319 gatttgttgttggaaaatatcttctttctgagaatgctcggccctgcttctctccttgtt 378
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 gatttgttattggaaaatatcttctttctgagaatgctcggccctgcttctctccttgtt 699

                                                                       
Query: 379 tgcctgagagcgtcagttagtaaatcatttaactgcctgggtctgctgcctcactgtgaa 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 tgcctgagagcgtcagttagtaaatcatttaactgcctgggtctgctgcctcactgtgaa 639

                                                                       
Query: 439 gcccaagtgtcaaaggagatcatttctaagttgttccaggtcgggaaaaaattgaatttt 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gcccaagtgtcaaaggagatcatttctaagttgttccaggtcgggaaaaaattgaatttt 579

                                                                       
Query: 499 tttcttactgagtgaaaacattaattgttccttggtagtaacatgttcatacaaaactat 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tttcttactgagtgaaaacattaattgttccttggtagtaacatgttcatacaaaactat 519

                                                   
Query: 559 gcaatggcttatctacaagttaaattgcacatgcttgccg 598
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gcaatggcttatctacaagttaaattgcacatgcttgccg 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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