BAC Information

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BAC

Clone NameMSMg01-545F23
Chromosome13 (Build37)
Map Location 13,514,870 - 13,515,454
singlet/doubletsinglet
Overlap geneLOC664960
Upstream geneHeatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b
Downstream geneNid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b, LOC100039916, Hecw1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545F23.T7 (MSMg01no545_f23.b1)MSMg01-545F23.TJ (MSMg01no545_f23.g1)
ACCAG610451AG610452
length728722
length of high quality
(start - end)
597 (60 - 656)586 (67 - 652)
definitionCHROMAT_FILE: MSMg01no545_f23.b1 PHD_FILE: MSMg01no545_f23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:19 2005CHROMAT_FILE: MSMg01no545_f23.g1 PHD_FILE: MSMg01no545_f23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:19 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAA
TTGTACCAATAAGAAGCTCAAGGCCACACACGTAAACATAGTAAAAGCAA
TGTACATCAAACCAGTATCCAACATCAAACTAAATGGCGAGAAACTTGAA
TCAACCCAACTAAAATGAGAGACTAGACAAGGCTGCCCACTCTCCCCCTG
CGTATCAATATAGTACTCGAACACTTCACCAGAGAAAGTAGACAACAAAA
GGAAGTCAAATGGGTATAAAGAGGAAAAGAAGAAGTCAAAATATTACTAT
TTGCAGACGATATGATAGTACATTCAAGTGACCTCAAATATCCCATCAGA
GAAATCCTATACCTGAGAAACAACTTCAGCAAAGTAGTTCGATATAAAAT
GAACTCAAACAAATCAGTAGCCTTCTTCTACTCAAAGGATAATAAGGCTG
AGAAAGATTTTAGGGAAATGACACACTTAACAATAATCACAAACAAGAGA
AAATACCTTGGTGTGATTTATCCAAGTTCTCTAACCAAAAAAGTCAAAGA
TCTATATGACAAGAATTTCAAGTCTCTGTAGCTGTCCAGTGATCATGGAG
AGCTGGGTACCTGAAAGGTTGCTGGAAATGAAAAAGGAACAAGGTGCAAG
AGAAGGATGAAGCCAAGACAAAGGCTCAAAGTTTAATATTCAACACTGGA
TGTATATAGGGAAAGCCCACAGATTCAT
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTTCTTTATAAGAGTTGCCATGGTGATGTCTCG
TTACAGCAAAAGAACCCGTAGCTATGACACCTGTATTCCTGTAAGTAATC
CCAATAAAACTCACTGGTTCACCAAGCTGGGCTTTGGTGTTATCTGTATT
TTGGTCTGTCATGTGCTGAGAAGATGTGTGTATTTAATCCCTCTGGGGAA
AAGTTTTGTCACACAACAACATTGCACAGGAGTACCCCAACATGAAGTCA
GTAATGAGCTCGCCTACAAGTCTATCTACAGTAAATGAGCATTAATAACT
CTGCAATAAACAGTTGTAATAAGTAACTCAGTAATAAGGTAGTTAATAAA
CGGTGATTGTTTGGGAGATAAAAAAAAAAGGATCACTAACACCTGTAATC
ATTAAAAAATGCAAATCAAAGCTACCCTAATCCCAGCACTAGAGGTTGAG
AGGCACAGGATAGCCTAGGGTACTTAGAAAGTTCTAGGATAGCCTAGGCT
AGATGGAGGAACTGGAGTATAAATCCCCAGGACTCATGTAACAAAAGCCA
GGAATAGCTATATATACCTATAACCCTGGAGTGGGAGCAGACACAGGCAG
ATCCCAGCAGTTCATAGCAACAGAGGAAGACGCAATGTCATTCTCTGATC
TTTGCAAGTACGTGCACTGCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_f23.g1 MSMg01no545_f23.g1 CHROMAT_FILE:
MSMg01no545_f23.g1 PHD_FILE: MSMg01no545_f23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:19 2005
         (586 letters)



>mm_chr13_13514670_13515654
          Length = 985

 Score = 1125 bits (582), Expect = 0.0
 Identities = 585/586 (99%), Gaps = 1/586 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttctttataagagttgccatggtgatgtctcgttacagcaaaagaacccgtagctatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttctttataagagttgccatggtgatgtctcgttacagcaaaagaacccgtagctatg 260

                                                                       
Query: 61  acacctgtattcctgtaagtaatcccaataaaactcactggttcaccaagctgggctttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacctgtattcctgtaagtaatcccaataaaactcactggttcaccaagctgggctttg 320

                                                                       
Query: 121 gtgttatctgtattttggtctgtcatgtgctgagaagatgtgtgtatttaatccctctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgttatctgtattttggtctgtcatgtgctgagaagatgtgtgtatttaatccctctgg 380

                                                                       
Query: 181 ggaaaagttttgtcacacaacaacattgcacaggagtaccccaacatgaagtcagtaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaaaagttttgtcacacaacaacattgcacaggagtaccccaacatgaagtcagtaatg 440

                                                                       
Query: 241 agctcgcctacaagtctatctacagtaaatgagcattaataactctgcaataaacagttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agctcgcctacaagtctatctacagtaaatgagcattaataactctgcaataaacagttg 500

                                                                       
Query: 301 taataagtaactcagtaataaggtagttaataaacggtgattgtttgggagataaaaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taataagtaactcagtaataaggtagttaataaacggtgattgtttgggagataaaaaaa 560

                                                                       
Query: 361 aaaggatcactaacacctgtaatcattaaaaaatgcaaatcaaagctaccctaatcccag 420
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aa-ggatcactaacacctgtaatcattaaaaaatgcaaatcaaagctaccctaatcccag 619

                                                                       
Query: 421 cactagaggttgagaggcacaggatagcctagggtacttagaaagttctaggatagccta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cactagaggttgagaggcacaggatagcctagggtacttagaaagttctaggatagccta 679

                                                                       
Query: 481 ggctagatggaggaactggagtataaatccccaggactcatgtaacaaaagccaggaata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggctagatggaggaactggagtataaatccccaggactcatgtaacaaaagccaggaata 739

                                                         
Query: 541 gctatatatacctataaccctggagtgggagcagacacaggcagat 586
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gctatatatacctataaccctggagtgggagcagacacaggcagat 785


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 985
Length adjustment: 10
Effective length of query: 576
Effective length of database: 975
Effective search space:   561600
Effective search space used:   561600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)