BAC Information

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BAC

Clone NameMSMg01-547H01
Chromosome13 (Build37)
Map Location 79,044,491 - 79,133,648
singlet/doubletdoublet
Overlap geneEG666883
Upstream gene1110033M05Rik, 1700013G10Rik, Nr2f1, EG666856, LOC268676, LOC100042683, LOC622365, LOC100043052
Downstream geneLOC666925
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547H01.T7 (MSMg01no547_h01.b1)MSMg01-547H01.TJ (MSMg01no547_h01.g1)
ACCAG612029AG612030
length755755
length of high quality
(start - end)		685 (30 - 714)693 (57 - 749)
definitionCHROMAT_FILE: MSMg01no547_h01.b1 PHD_FILE: MSMg01no547_h01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:04 2005CHROMAT_FILE: MSMg01no547_h01.g1 PHD_FILE: MSMg01no547_h01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,133,109 - 79,133,648)(79,044,491 - 79,045,183)
sequence
GCCGCTATACGACTCCTATAGGTCGAGGATCCGCGGAATTCTGTGGTGCT
GCAGTTTTCTACATAAGTAATTTTATTTAACAACATTTAAATAAGACCTT
GGTTTGGAAGGTCTTAAAGTTAGGTTTACAGGCTCCTTTGTGACTGCCAA
TTTCCTGAAAATGTCCCAGAGAACTCCAGCTGCCTAAAAGATGTGTTCTT
CCTCATTTCTTGAAGCTTTTAATCTTTTTTCCTAAAAGTTAAATCAAGGC
TTAATTTCTCAAGGTTTTTAAACACAAAATCTAATCAAATTACTTTTAAT
TCATTCAATTATGGACAAATATTAAAAATAAACTGTGTGTTAAAATACTA
TATTAGATTTCTGAACTAAAGAGCCTGACAAATACAGAGGCAGATGCTGG
CAATCAACCACTGGACTGAGCAAGGGGTCCCCAATGAAGGAATTAGAGAA
AGGACTGAAGGAGCTGAAAGGGTTTGCAACCCCATAGGAAGAACAAAACT
ATCAGCCAATCAGAAACCTCAGAGTTCCGAGGGACTAAACCACCAACCAA
AGAGTACACATAGAAGGACCCAAGGCTCCAGCTGTGCCACGATCCGTCCC
CCCCCCCACCTCCCCCCACCCCCGCATCAATCCCAAGGAATCAGGGGTTC
CAGCAGATAGGCATAGTTAGTTGACAGACAGACACAGACAGGAGAATATG
CTGGATCTGAATGTAATTTGTCAAATCGAGCATCAAACTTTTTAGACAGA
AGAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCCATGGAGAAATATATAAATGACAGCTCTGAGATGGGATTCAGT
CACATGTGGCCTCTGACCTCTATGGATTTTACTACAAACTTGAGGCAGGG
GTGTGTTATACAGTATCTATGAGAGTAGAAGAAAGAGAATCTGATCATGG
AATGATTTACTTAATTGTATAGGAATTATGAATGCCCCCTTTGAATTTAT
TTATCATTGCTATTTTTTTAACATGGAAAAGGATAAATCTTAACATGTTG
AGATCCACTTATGCACAAAATCATACTCAAAATCATTGACATTGCAACAT
AACAATTTTTTATTTATTGTTTCAACTTAGGACACTGGGATTCTTTCCAC
CTTCAAAATAATTTCAAATAATCTGCTATAACAAACGATCACAAATTGTG
TATCTTATAAAATGGAAATTATTCCATCACTGCTCCAGAAAGTAGAAATA
AAAAACCACACCAATAGATCAGTCACATTCCTATGACCATTTAGAGATGG
TTTCTTCAAGCTTCTCTCAACTTCTGCCAGTGTGGTGTCATAGTCACTGG
CATTCCTGGGTGTGCAAGAAGCATAAACTTGCCTACTGATTCCATTTCCA
CATAGTGATTCCCTATGGACATGTGTCTCTGTGTCAAATCTCTTCTACTA
AGGACAGACTTCTAGATCTAGGACTCAGTCTTCTAGGTATTTTTCATAAT
TGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_h01.b1 MSMg01no547_h01.b1 CHROMAT_FILE:
MSMg01no547_h01.b1 PHD_FILE: MSMg01no547_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:04 2005
         (685 letters)



>mm_chr13_79133109_79134193
          Length = 1085

 Score = 1021 bits (528), Expect = 0.0
 Identities = 537/540 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattctgtggtgctgcagttttctacataagtaattttatttaacaacatttaaataa 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ggaattctgtggtgctgcagttttctacataagtaattttatttaacaacatttaaataa 481

                                                                       
Query: 66  gaccttggtttggaaggtcttaaagttaggtttacaggctcctttgtgactgccaatttc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gaccttggtttggaaggtcttaaagttaggtttacaggctcctttgtgactgccaatttc 421

                                                                       
Query: 126 ctgaaaatgtcccagagaactccagctgcctaaaagatgtgttcttcctcatttcttgaa 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ctgaaaatgtcccagagaactccagctgcctaaaagatgtgttcttcctcatttcttgaa 361

                                                                       
Query: 186 gcttttaatcttttttcctaaaagttaaatcaaggcttaatttctcaaggtttttaaaca 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gcttttaatcttttttcctaaaagttaaatcaaggcttaatttctcaaggtttttaaaca 301

                                                                       
Query: 246 caaaatctaatcaaattacttttaattcattcaattatggacaaatattaaaaataaact 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 caaaatctaatcaaattacttttaattcattcaattatggacaaatattaaaaataaact 241

                                                                       
Query: 306 gtgtgttaaaatactatattagatttctgaactaaagagcctgacaaatacagaggcaga 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gtgtgttaaaatactatattagatttctgaactaaagagcctgacaaatacagaggcaga 181

                                                                       
Query: 366 tgctggcaatcaaccactggactgagcaaggggtccccaatgaaggaattagagaaagga 425
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 180 tgctggcaatcaaccactggactgagcaaggggtccccaatgaaggaattggagaaagga 121

                                                                       
Query: 426 ctgaaggagctgaaagggtttgcaaccccataggaagaacaaaactatcagccaatcaga 485
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 120 ctgaaggagctgaaagggtttgcaaccccataggaagaacaaaactatcaaccaatcaga 61

                                                                       
Query: 486 aacctcagagttccgagggactaaaccaccaaccaaagagtacacatagaaggacccaag 545
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 60  aacctcagagttccgagggactaaaccaccaaccaaagagtacacatggaaggacccaag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no547_h01.g1 MSMg01no547_h01.g1 CHROMAT_FILE:
MSMg01no547_h01.g1 PHD_FILE: MSMg01no547_h01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:04 2005
         (693 letters)



>mm_chr13_79044291_79045383
          Length = 1093

 Score = 1317 bits (681), Expect = 0.0
 Identities = 690/693 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatggagaaatatataaatgacagctctgagatgggattcagtcacatgtggcctctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatggagaaatatataaatgacagctctgagatgggattcagtcacatgtggcctctga 260

                                                                       
Query: 61  cctctatggattttactacaaacttgaggcaggggtgtgttatacagtatctatgagagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctctatggattttactacaaacttgaggcaggggtgtgttatacagtatctatgagagt 320

                                                                       
Query: 121 agaagaaagagaatctgatcatggaatgatttacttaattgtataggaattatgaatgcc 180
           ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 321 agaagaaagagaatctgatcatggaatgatttacttaattgcataggaattaggaatgcc 380

                                                                       
Query: 181 ccctttgaatttatttatcattgctatttttttaacatggaaaaggataaatcttaacat 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 ccctttgaatttatttatcattgctatttttttaacatggaaaaggataaatcttaacgt 440

                                                                       
Query: 241 gttgagatccacttatgcacaaaatcatactcaaaatcattgacattgcaacataacaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttgagatccacttatgcacaaaatcatactcaaaatcattgacattgcaacataacaat 500

                                                                       
Query: 301 tttttatttattgtttcaacttaggacactgggattctttccaccttcaaaataatttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttttatttattgtttcaacttaggacactgggattctttccaccttcaaaataatttca 560

                                                                       
Query: 361 aataatctgctataacaaacgatcacaaattgtgtatcttataaaatggaaattattcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aataatctgctataacaaacgatcacaaattgtgtatcttataaaatggaaattattcca 620

                                                                       
Query: 421 tcactgctccagaaagtagaaataaaaaaccacaccaatagatcagtcacattcctatga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcactgctccagaaagtagaaataaaaaaccacaccaatagatcagtcacattcctatga 680

                                                                       
Query: 481 ccatttagagatggtttcttcaagcttctctcaacttctgccagtgtggtgtcatagtca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccatttagagatggtttcttcaagcttctctcaacttctgccagtgtggtgtcatagtca 740

                                                                       
Query: 541 ctggcattcctgggtgtgcaagaagcataaacttgcctactgattccatttccacatagt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctggcattcctgggtgtgcaagaagcataaacttgcctactgattccatttccacatagt 800

                                                                       
Query: 601 gattccctatggacatgtgtctctgtgtcaaatctcttctactaaggacagacttctaga 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gattccctatggacatgtgtctctgtgtcaaatctcttctactaaggacagacttctaga 860

                                            
Query: 661 tctaggactcagtcttctaggtatttttcataa 693
           |||||||||||||||||||||||||||||||||
Sbjct: 861 tctaggactcagtcttctaggtatttttcataa 893


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space:   739689
Effective search space used:   739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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