BAC Information

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BAC

Clone NameMSMg01-547M17
Chromosome13 (Build37)
Map Location 32,837,326 - 32,837,873
singlet/doubletsinglet
Overlap genenone
Upstream geneFoxc1, 4930548F15Rik, Gmds, LOC666212
Downstream geneWrnip1, Serpinb1a, Serpinb1-ps1, Serpinb1c, Serpinb6b, Serpinb9, Serpinb9b, Serpinb1b, LOC628301, Serpinb9c, Serpinb9d, Serpinb9e, Serpinb9f, OTTMUSG00000000724, Serpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547M17.T7 (MSMg01no547_m17.b1)MSMg01-547M17.TJ (MSMg01no547_m17.g1)
ACCAG612295AG612296
length735764
length of high quality
(start - end)
656 (42 - 697)549 (69 - 617)
definitionCHROMAT_FILE: MSMg01no547_m17.b1 PHD_FILE: MSMg01no547_m17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:31 2005CHROMAT_FILE: MSMg01no547_m17.g1 PHD_FILE: MSMg01no547_m17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCAACTGAATAATACTGAATGGCTAAGAAGCACCTGAAAAAAATTTCAA
CATCCTTAATCATCAGGGAAATGTAAATCAAAACAACCCTGAGATTCCAC
CTCACATCAGTCAGAATGGCTAAGATCACAAATTCAGGTGACAGCAGATG
CTGGCAAGAATGTGGAAAAAGAGAAACACTCTTCCATTGTTGGTGGGATT
GCAAGCTTGTACAACCACTCTGGAAGTCAGTCTGGTGGTTCCTCAGAAAA
TTGGACATAGTACTACCGGAAGATCCAGCAATACCTCTCCTGGGCATATA
CCCAGAAGATGTTCCAACTGGTAATAAGGACACATGCTCCACCATTTTCA
TAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCC
TCAACAGAGGAATGGATACGGAAAATGTGGTACATTTACACAATGGAGTA
CTACTCAGCTATTGAAAACAAGTAATTTATGAAATTCTTGGGCAAATTGA
TGGATCTGGAGGATATAATCCTGAGTGAGGTAACCCAATCACAAAAGAAG
TCACTTGATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACCTAGA
ACACCCAAGATACAATTTGCAAAACACAAGAAAATCAAGAAGAAGGAAGA
CCAATGCGTGGATACTTCATTCCTTCTTAGAACAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTATTACTGCTATAGTCAGAGACCACACTGA
CCACGCTTTGATTGTTTCACTGGCAATGTCCTTTGATTTATTGTTGCCTT
TTAACTTGGATTTAAGTGGTGTGAGGTTGGCACACAGGCCTGGGCAGGCT
TTCTCACAGGCATTCCACATTCTAGAATTTGCTAACTATCCCTGCTTATC
ATAGAAAGTACACAGATGCCTGTGAACACAGCTGGTGAAGCTGTTGAAAT
ACTAAACAGGACCAGCTTAGATTCCTACCTATTCTCCACAGAGACCATCC
ATGAACTCTGGTGGCTTCTGATGAACATGAGCCCCAAAGAGCAGTGCTTG
AGGGTGTTGGCTTACAGAACACTGGTAGAGATACGGTGATCGGTGATCGT
TTCTTTAAATAAATCAGCTAGTAATAGTCTCTTTCTTCTACATTTAGAAC
AAGATAAAGATAAAGCTACTTCAAATGACCCACTCTGGTTTATCTTCTGA
TATGCATCTACTTGAATTACATATGAGTTGTGCTTCACATTTTAAATTTT
AACCTAAGTGCTACAGTGCCATGAATAGATACTATGGCTGGAACAAAGAG
CTTTAGATATTCTGGAAACATTTATTACTATATGCTGCTGTTTGGAATGA
GAGTCTCAAAAACTACTTTTAAATTACATGCCTTTTAAAATCAGCTTCAC
CATTCTTAAAAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_m17.g1 MSMg01no547_m17.g1 CHROMAT_FILE:
MSMg01no547_m17.g1 PHD_FILE: MSMg01no547_m17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:31 2005
         (549 letters)



>mm_chr13_32837125_32838073
          Length = 949

 Score = 1013 bits (524), Expect = 0.0
 Identities = 542/548 (98%)
 Strand = Plus / Minus

                                                                       
Query: 2   ctattactgctatagtcagagaccacactgaccacgctttgattgtttcactggcaatgt 61
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 749 ctattactgctatagtcagagaccacactgaccacactttgattgtttcactggcaatgt 690

                                                                       
Query: 62  cctttgatttattgttgccttttaacttggatttaagtggtgtgaggttggcacacaggc 121
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 689 cctttgatttattgttgccttttaacttggatttaagtggtgtgagattggcacacaggc 630

                                                                       
Query: 122 ctgggcaggctttctcacaggcattccacattctagaatttgctaactatccctgcttat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ctgggcaggctttctcacaggcattccacattctagaatttgctaactatccctgcttat 570

                                                                       
Query: 182 catagaaagtacacagatgcctgtgaacacagctggtgaagctgttgaaatactaaacag 241
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 569 catagaaagtacacagatgcctgtgaacacagctggtgaagctggtgaaatactaaacag 510

                                                                       
Query: 242 gaccagcttagattcctacctattctccacagagaccatccatgaactctggtggcttct 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gaccagcttagattcctacctattctccacagagaccatccatgaactctggtggcttct 450

                                                                       
Query: 302 gatgaacatgagccccaaagagcagtgcttgagggtgttggcttacagaacactggtaga 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gatgaacatgagccccaaagagcagtgcttgagggtgttggcttacagaacactggtaga 390

                                                                       
Query: 362 gatacggtgatcggtgatcgtttctttaaataaatcagctagtaatagtctctttcttct 421
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 389 gatacggtgatcggtgatcgtttctttaaataaatcagctaataatagtctctttcttct 330

                                                                       
Query: 422 acatttagaacaagataaagataaagctacttcaaatgacccactctggtttatcttctg 481
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 329 acatttagaacaagataaagataaagctacttcaaatgacccactctggtctatcttctg 270

                                                                       
Query: 482 atatgcatctacttgaattacatatgagttgtgcttcacattttaaattttaacctaagt 541
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 269 atatgcatctacttgaattacatatgacttgtgcttcacattttaaattttaacctaagt 210

                   
Query: 542 gctacagt 549
           ||||||||
Sbjct: 209 gctacagt 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)