BAC Information

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BAC

Clone NameMSMg01-548A11
Chromosome13 (Build37)
Map Location 50,976,755 - 50,977,362
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190
Downstream geneEG667712, LOC676997, EG667717, Spin1, 4930519N16Rik, EG667728, LOC667733, Ppia-ps13_636.1, LOC625524, Edg3, Shc3, Cks2, Secisbp2, Sema4d, Gadd45g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548A11.T7 (MSMg01no548_a11.b1)MSMg01-548A11.TJ (MSMg01no548_a11.g1)
ACCAG612474AG612475
length753748
length of high quality
(start - end)		606 (44 - 649)577 (75 - 651)
definitionCHROMAT_FILE: MSMg01no548_a11.b1 PHD_FILE: MSMg01no548_a11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:50 2005CHROMAT_FILE: MSMg01no548_a11.g1 PHD_FILE: MSMg01no548_a11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:50 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NGGCGTCTGGTGGTGCCTCTACACGACTCCTATAGGCAGACGATCCGCGG
AATTCTCTGTTGTGCTCTGTACCTTATTATTTGTCAGGTTATTTTGTTTG
TTGGTGTCTATTTTCCTGAATTCTATACATATTCCTAACATGAATTTATC
TGAAGGCAACAAATGTTGAACAATTGGTAAATTTGTTACTCTATTCTTGT
GTTTCATTTTAAAAACTGTTCATTAGTTGATTGTTTTTATTTTTGGTATT
TAACTAATTTTAAATTTAAGTAATTCTTGTTTAAGTAATTCTTTGAATAT
TCTAAATGTTAAGGCTCCACACTGGGATTTCACTGTTAGCATGACCTCTC
ATCCTTTGAGCCTGTAATGCAAACATCTTTTATCTGCTTAATATAACCAT
TTAATTTAATGTAATTTCATTTTCAACTTATTGGGCTCTTGTCTGTGCTA
TTGTTGTTCTTTTGTCCATTAATTTTTTTATTCACTTTACATCCTGACTA
TAATCCCTCCTTCCAGTCCCACCTTCACAAATCTCTCTCCCATTACTCCC
TTTCAGACACCCCACCTTTGGTACCAACCAACCCCAACAATCAACTGGAA
GCAGGACTAAGTGCATCCTGTCCTACTGAGGTCTACCCATGCATTCCAGC
TGGGGGAAGGGAAACCCAAGGCTGGCAATAGAGTCAAAGACAGCTCCCAT
TCCAATTTTTCANGACTCACATGAAGCCAGAGCTGCCCAACTGTTACAAA
TGG

NAGGAGGCAGTGGTGTGTTGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCCCAAAAGCCATGGGAGACACAGG
TTCTCTGTTGGTTCCTGGGTAGGGATCCTTACAGGAAAGCTTCCAGCAGA
TACATTAACAAGGTCCAGATCTGTTCTACTCCAGATTCACTGCACACCCA
GCAGTTAAACAGCGGAAGAGCAGCGAATCTTTCCTATACATTCTGATTGG
CTGCAGGCATCATGTGCAGCATGCACCATGTGATCAACTGGCAGCCTGTA
ATTGAATCCATTCCTGTGATTGGCTGGAATTTCTTTGCTGTGATTGGCTG
ACATTCGATTGCTTAGTTACAAGATTAACCTACCCTTGGTTCATATAGGA
AATGAGGTCACAGGTCTCTGTATGGTGGCCACATTGGACAAACCTCATTG
GTTTTTGTCCAAACTAGAGTTCAACAGTCCCATTTCTTTCGTCCTTCCAG
GTCACTCAAGTATGGGCGTTGATGGGCCCTGCCACTGTCGCCAGGATTGA
AAGGAATCTTAAGGATTCCTTACAAAGTTCACATTTCACAGTGCCAGGTT
AGCCCAGCACTCTTAGGAATTCCTTCTTCGGCATTCTGACTATAAAGGCA
CGATTTGGTGGGAAAGAAGAGCAACTCTTTGTTCAATAATTAAGGAGAGT
CCTAAGAGATACAGGCAGACNATATTGCTGACATCCCATTCTTCTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_a11.b1 MSMg01no548_a11.b1 CHROMAT_FILE:
MSMg01no548_a11.b1 PHD_FILE: MSMg01no548_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:50 2005
         (606 letters)



>mm_chr13_50976646_50977659
          Length = 1014

 Score = 1056 bits (546), Expect = 0.0
 Identities = 589/608 (96%), Gaps = 8/608 (1%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctctgttgtgctctgtaccttattatttgtcaggttattttgtttgttggtgtct 66
           |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 717 gaattctctgttgtgctctgtatcttattatttgtcagattattttgtttgttggtgtct 658

                                                                       
Query: 67  attttcctgaattctatacatattcctaacatgaatttatctgaaggcaacaaatgttga 126
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 657 attttcctgaattctatacatattcctaacatgaatttatctgaacgcaacaaatgttga 598

                                                                       
Query: 127 acaattggtaaatttgttactctattcttgtgtttcattttaaaaactgttcatta---- 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 597 acaattggtaaatttgttactctattcttgtgtttcattttaaaaactgttcattagttc 538

                                                                       
Query: 183 ----gttgattgtttttatttttggtatttaactaattttaaatttaagtaattcttgtt 238
               ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 537 atttgttgattgtttttatttttggtatttaactaattttaaatttaagtaattcttatt 478

                                                                       
Query: 239 taagtaattctttgaatattctaaatgttaaggctccacactgggatttcactgttagca 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 taagtaattctttgaatattctaaatgttaaggctccacactgggatttcactgttagca 418

                                                                       
Query: 299 tgacctctcatcctttgagcctgtaatgcaaacatcttttatctgcttaatataaccatt 358
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 417 tgacctctcatcctttgcgcctgtaatgcaaacatcttttatctgcttaatataaccgtt 358

                                                                       
Query: 359 taatttaatgtaatttcattttcaacttattgggctcttgtctgtgctattgttgttctt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 taatttaatgtaatttcattttcaacttattgggctcttgtctgtgctattgttgttctt 298

                                                                       
Query: 419 ttgtccattaatttttttattcactttacatcctgactataatccctccttccagtccca 478
           ||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 297 ttgtccattaattttttaattaactttacatcctgactatagtccctccttccagtccca 238

                                                                       
Query: 479 ccttcacaaatctctctcccattactccctttcagacaccccacctttggtaccaaccaa 538
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 237 ccttcacaaatctctctcccattactccctttcagacacaccacctttggtaccaaccaa 178

                                                                       
Query: 539 ccccaacaatcaactggaagcaggactaagtgcatcctgtcctactgaggtctacccatg 598
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 177 ccccaacaatcaactggaagcaggactaagtgcatcctgtcttactgaggtctacccatg 118

                   
Query: 599 cattccag 606
           ||||||||
Sbjct: 117 cattccag 110


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1014
Length adjustment: 10
Effective length of query: 596
Effective length of database: 1004
Effective search space:   598384
Effective search space used:   598384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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