BAC Information

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BAC

Clone NameMSMg01-548F12
Chromosome13 (Build37)
Map Location 105,218,553 - 105,219,057
singlet/doubletsinglet
Overlap geneAdamts6
Upstream geneLOC100040045, Ppia-ps13_1282.1, Sfrs12, Erbb2ip, LOC100040086, D130037M23Rik, Nln, Sgtb, 2410002O22Rik, LOC100040518, Trim23, Ppwd1, Cenpk
Downstream geneLOC667518, Sdccag10, 3110031B13Rik, A930021C24Rik, EG238836, Rgs7bp, 4933425L06Rik, LOC100040646, LOC100040656, Rnf180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548F12.T7 (MSMg01no548_f12.b1)MSMg01-548F12.TJ (MSMg01no548_f12.g1)
ACCAG612712AG612713
length720732
length of high quality
(start - end)		592 (49 - 640)558 (72 - 629)
definitionCHROMAT_FILE: MSMg01no548_f12.b1 PHD_FILE: MSMg01no548_f12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:14 2005CHROMAT_FILE: MSMg01no548_f12.g1 PHD_FILE: MSMg01no548_f12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTCTGTACTCACCTCCTCTGGGCAATGAGTCATTGAAGAAC
CCTTCAATGGCATCACAGGTGCTTCCATCCCCACCACAGACTCGGCACCT
ATCTTCCCTAGCATCAGATCCCAAAATATTATCACAACCTACGTGCTGAA
AATAGAGAATATTCAGTGTGTCAAAAAGGGAAATTTCTGGAACCATAACT
AATCAAATACATATAACTTAGTTATTTACTTGTATTTCCAGTAAAGGAAA
TCAAAATAGGAAATACTTTCCCATCTATTGTCATTCTCTCTTTAGTTAAC
ATTTCTTAACCACTGAGCCATCTCTCCAGCCCGTAGTTAACATTTCTAAA
TACTTAAACTTACAAAAAAATGGATTTCCTATAAATATAACTATTTCTAA
CTTATACTTCTCTTTCATTGACAGATACCATGTTCTAATGTTTTAGAATA
TTGTTATTTATTAGTTAACAGACTCTTCCTTTTACTCCCAGTAAAGTAAT
TCAAGAACTAGGAAAAAATGACTCATGGTCTCCTACAGGGCTCTAACAGA
GTGGACACTACTGAGCTCCTCCTCTGTGGGACTATAAAAGAGAGTCCTAC
TGAGCTCCTCCTCTGTGGGACTATAAAGAGAGTCCTACTGAGTTCTTCCT
CTGCAAGTAATTACAGAGAG

TATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
GCACCTGAAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGAGTGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGGTGGGAAGGCAGGCTTGTACAACCACTCTGGAAATCAGTC
TGGTGGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGATCCAGCAAT
ATCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACA
CATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGG
AAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTA
CATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAAAGTGATTTCTA
ATTGAGGTGCAAAGAAAGATTTGACAAAATGAATCAGAGATAGGATATGC
CAAATTCTCATAAAACAACAGGAAAGAAGGTACTTAAGAGCAGTTCAGGA
AAAAAGAAAGGATGGATGGTGTGTGTGTATGGCAGTTTTACCAGAGAGTT
TTACAGAGACGGGTTGCAAAGAGTAAGTTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_f12.b1 MSMg01no548_f12.b1 CHROMAT_FILE:
MSMg01no548_f12.b1 PHD_FILE: MSMg01no548_f12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:14 2005
         (592 letters)



>mm_chr13_105218553_105219544
          Length = 992

 Score =  969 bits (501), Expect = 0.0
 Identities = 504/505 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttctgtactcacctcctctgggcaatgagtcattgaagaacccttcaatggca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaattctttctgtactcacctcctctgggcaatgagtcattgaagaacccttcaatggca 446

                                                                       
Query: 65  tcacaggtgcttccatccccaccacagactcggcacctatcttccctagcatcagatccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcacaggtgcttccatccccaccacagactcggcacctatcttccctagcatcagatccc 386

                                                                       
Query: 125 aaaatattatcacaacctacgtgctgaaaatagagaatattcagtgtgtcaaaaagggaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaatattatcacaacctacgtgctgaaaatagagaatattcagtgtgtcaaaaagggaa 326

                                                                       
Query: 185 atttctggaaccataactaatcaaatacatataacttagttatttacttgtatttccagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atttctggaaccataactaatcaaatacatataacttagttatttacttgtatttccagt 266

                                                                       
Query: 245 aaaggaaatcaaaataggaaatactttcccatctattgtcattctctctttagttaacat 304
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 aaaggaaatcaaaataggaaatacttttccatctattgtcattctctctttagttaacat 206

                                                                       
Query: 305 ttcttaaccactgagccatctctccagcccgtagttaacatttctaaatacttaaactta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ttcttaaccactgagccatctctccagcccgtagttaacatttctaaatacttaaactta 146

                                                                       
Query: 365 caaaaaaatggatttcctataaatataactatttctaacttatacttctctttcattgac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 caaaaaaatggatttcctataaatataactatttctaacttatacttctctttcattgac 86

                                                                       
Query: 425 agataccatgttctaatgttttagaatattgttatttattagttaacagactcttccttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  agataccatgttctaatgttttagaatattgttatttattagttaacagactcttccttt 26

                                    
Query: 485 tactcccagtaaagtaattcaagaa 509
           |||||||||||||||||||||||||
Sbjct: 25  tactcccagtaaagtaattcaagaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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