BAC Information

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BAC

Clone NameMSMg01-548J19
Chromosome13 (Build37)
Map Location 18,880,769 - 18,881,320
singlet/doubletsinglet
Overlap geneVps41
Upstream geneCdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
Downstream geneAmph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548J19.T7 (MSMg01no548_j19.b1)MSMg01-548J19.TJ (MSMg01no548_j19.g1)
ACCAG612917AG612918
length798732
length of high quality
(start - end)
---551 (74 - 624)
definitionCHROMAT_FILE: MSMg01no548_j19.b1 PHD_FILE: MSMg01no548_j19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:34 2005CHROMAT_FILE: MSMg01no548_j19.g1 PHD_FILE: MSMg01no548_j19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCGAGGATCCGC
GGAATTCATGATACTCTGCAGGCTCCAATACGATATTCAGACATTAATGT
GCTGATTAAAAGTATGGACATGAATGGAATAATGTTCACTAGTATGAAAG
GAAATACATGGCTCGCCCAACTGCGCACTGTACAGCCTGTTCAATTGTAT
GGACATGTGAATATGAACGAGCAAAGCCTACCCTACCAAATGCCAGACGA
TAGTAAACACTCTGCACTCTATCTTATCCAAAATGCTGAGAACTGAGGAT
TAAAAGCTCTAAAGAACCTAACACTGAGACTCCAATCTGGTGGAGTTAGT
TCCCGCTTACATGTAAATTTCACTCTTCTTCCAATGAACTTTAACTAACT
TTTAATAAGAAAAAAAATCATCACCCCCCAAAATTTTGTATAAAACTTGA
CTTCCTCTCCTAACATTCCGTCACACATTTAAGGTCACTTTGCTAACCCA
ACTTTTGCTCATATCCCTCTGAAGGGTACCAAATAACTGAATATCAATTA
ACAGCCCTTCTTTTTAACAACCAAAAGACTTTTATCTCCTTCCAAGGAAC
TAAATGGGTTCTTGTGTAAACACCTCCTGGGTTTTTCCATTTTACTGAAA
ATGGGCCTTGTCTGCAATTGGTGAAAAAAAGAGATCCTTAGCACCTATAA
CGTATTTACCATTTTGGGAAAAACCCAACTAATCCTCATTTGCCTAACTT
GGGTCTCTTTCCTGTGTCCAGCTTATATTCCCACACCTGGCTCATCTA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACATTATGTCATGCTCGAATAGTTCT
CAGACAGTTAGCAGAAAGAACAGCAAAGATTTGCTTATTTGAGTCAAGGT
CTGTGAATGTAGCCACAGACTGGCCTCAAATGAACAATTCTCCTATTTCA
TCCTCCTGCTTGTTGGATTATAAGCATAGGTGTTTTGACCATACCTGGCT
GAAAGGTTTTATTTTCTAATGGGTGAATTTGTCTATTGAGAGAATTCTCT
GCTTGAAGCTTGGGTGAACGAATCATTCATTCACAACTTATGAACATTAA
AACAAGAAAAACATTGAGTTCACATAGTCTTTTTGAGTACAAAAAATGAG
TTTGTTATTTAAAATATTACACAGAAGTCTCATTAGCCTGTGTTGATGTA
ATAAAATGCTGTTAGACTGGGCAGTTTTTTAACAAGGGAACATTATTTCT
GACAACTGTGAACATGAGGATCCTGGGTTCAGTGTTTGGGGAGGAATGCC
CTCCCTGCTCCCAGAGGACACTGCCACAGTCCTCCCTGGTTTGAAGGATG
CATTTGTCTCCTTAGTGTCTGAAAGCANGAAGACAAATGTGCCTACTTAG
CTTTCTTTATTCCCTTTATACTGGTACTGGTGTATCATTCTTGAGGGAAC
ATCCTGCANGANGCCATCCCCCCATATACCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_j19.g1 MSMg01no548_j19.g1 CHROMAT_FILE:
MSMg01no548_j19.g1 PHD_FILE: MSMg01no548_j19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:34 2005
         (551 letters)



>mm_chr13_18880570_18881520
          Length = 951

 Score = 1027 bits (531), Expect = 0.0
 Identities = 547/553 (98%), Gaps = 3/553 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacattatgtcatgctcgaatagttctcagacagttagcagaaagaacagcaaagatttg 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 200 cacattatgtcatgctcgaatagttct-agacagttagcagaaagaacagcaaagatttg 258

                                                                       
Query: 61  cttatttgagtcaaggtctgtgaatgtagccacagactggcctcaaatgaacaattctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cttatttgagtcaaggtctgtgaatgtagccacagactggcctcaaatgaacaattctcc 318

                                                                       
Query: 121 tatttcatcctcctgcttgttggattataagcataggtgttttgaccatacctggctgaa 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 319 tatttcatcctcctgcttgttggattataagcataggtgtattgaccatacctggctgaa 378

                                                                       
Query: 181 aggttttattttctaatgggtgaatttgtctattgagagaattctctgcttgaagcttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aggttttattttctaatgggtgaatttgtctattgagagaattctctgcttgaagcttgg 438

                                                                       
Query: 241 gtgaacgaatcattcattcacaacttatgaacattaaaacaagaaaaacattgagttcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gtgaacgaatcattcattcacaacttatgaacattaaaacaagaaaaacattgagttcac 498

                                                                       
Query: 301 atagtcttttt--gagtacaaaaaatgagtttgttatttaaaatattacacagaagtctc 358
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 atagtctttttttgagtacaaaaaatgagtttgttatttaaaatattacacagaagtctc 558

                                                                       
Query: 359 attagcctgtgttgatgtaataaaatgctgttagactgggcagttttttaacaagggaac 418
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 559 attagcctgtgttgatgtaataaaatgctattagactgggcagttttttaacaagggaac 618

                                                                       
Query: 419 attatttctgacaactgtgaacatgaggatcctgggttcagtgtttggggaggaatgccc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 619 attatttctgacaactgtgaacatgaggatcctgggttcagtgtttggggaggaatgtcc 678

                                                                       
Query: 479 tccctgctcccagaggacactgccacagtcctccctggtttgaaggatgcatttgtctcc 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tccctgctcccagaggacactgccacagtcctccctggtttgaaggatgcatttgtctcc 738

                        
Query: 539 ttagtgtctgaaa 551
           |||||||||||||
Sbjct: 739 ttagtgtctgaaa 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)