BAC Information

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BAC

Clone NameMSMg01-548N03
Chromosome13 (Build37)
Map Location 33,517,583 - 33,518,277
singlet/doubletsinglet
Overlap genenone
Upstream geneWrnip1, Serpinb1a, Serpinb1-ps1, Serpinb1c, Serpinb6b, Serpinb9, Serpinb9b, Serpinb1b, LOC628301, Serpinb9c, Serpinb9d, Serpinb9e, Serpinb9f, OTTMUSG00000000724
Downstream geneSerpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720, Serpinb6c, Serpinb6a, Nqo2, 4930482L21Rik, Ripk1, Bphl, Tubb2a, LOC100042686, Tubb2b, 2310047M15Rik, 3110004L20Rik, LOC620132, EG666666
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548N03.T7 (MSMg01no548_n03.b1)MSMg01-548N03.TJ (MSMg01no548_n03.g1)
ACCAG613076AG613077
length741737
length of high quality
(start - end)		691 (43 - 733)662 (73 - 734)
definitionCHROMAT_FILE: MSMg01no548_n03.b1 PHD_FILE: MSMg01no548_n03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:51 2005CHROMAT_FILE: MSMg01no548_n03.g1 PHD_FILE: MSMg01no548_n03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:51 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTATCTGTGGCATGGCTTTACTGAATGACAATCATGATATTAAATGTG
GTGAGACTTTGTGAAAGAATCATTCTCTCTGTGTCAATGTGCATTATCAA
GAAAGTAAAGAGAACATGTCTATAAAATGAAAGAATGGTAAATCTACAGA
CACAGAGAGAAGATTGGTTGTTACACAAACAGGGAGGAAAGAATAGAGTC
ACTGATTGACGGTTATACAATTTGTTTGAAAGGCGATTAAAGATGATTAT
AGCATGTCATTGACAGGCAATGAAGTTTCTACTCATATATTATTATTATT
GTTAATATTATTAGTTTTTTATTATACAAATAAATGCAATAAAATGCTTT
GAAAAACCAAACTAGGACAGAGGGGCTTTGCTTTGGAAGATAGGAGCAAT
CAGCCCACACCCAGATGCAGCTAGACACCCCAGAATATCTGACACATCAG
GAAAAAAGGATCACAGGATCACAGGATCACAGGATAACAGGATAAAAGGC
TATCAGGAGGGACAGGATCCAGTCAGAGACAGTAAGAGAAGTTAAATCCA
GAGATAATCAGATGGCAAGGGACAAGATAAGGAACATAAGGATCAGAAAT
CAATGCTAGTTGGTAGCATCAAAACCTAGCTCTCCCACCACAGCAAGCCC
TAGATACCTCCACACACCTGAAAAGCAAGAATATATCTAAN

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGACTTGTTTCATGAAG
GGGTTTTGGATTTTATCAAATGCTTTCTCAGTATCTAATGAAATGATCAT
GGGATTTTTGTATTTGAGTTTGTTTATATAGTGGATTACGTTTATGTGTT
TTCGTTGATTAAACCATCCCTGCATCCCAGGGATGAAGCTTACTTAGTGA
TGATGGATGATCATTTTGATGTGTTCTTGAATTCGGTTTGTGGGGATTTT
ATTGAGCATTTTTGCATCAGTATATATAAGGGAAATCGGTCTGAAGTTCT
CTTTCTTTGTTGGATCTTTGTGTGGTTTAGTTATCAGAGTAATTGTGGCT
CCATAGAATGAATTGGGTAGAGTACCTTCTGTTTCTATTTTGAGGAATAG
TTTGAGGAGAGTTTGAATTAGGTCTTATTTGAAGGTCTGATAGAAATCTA
CACTAAAACCATCTGGTCCTGGGCTTTTTTTGGTTGGGAAATTGTTAATG
ACTGCTTCTATTTCTTTCGGGGAAATGGGACTGTTAAGATTGTTAATCTG
ATCCTGATTTAGCTCTGGTACCTGGTATCTGTCTAGGAAATTGTCCATTT
CATCCAGGTTTTCTCGTTTTGTTGAGTATAGCCTTTTGTAGTAGGATCTG
ATGATATTTTGGGTTTCGTCAGGTTCTGTTGTTATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_n03.b1 MSMg01no548_n03.b1 CHROMAT_FILE:
MSMg01no548_n03.b1 PHD_FILE: MSMg01no548_n03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:51 2005
         (691 letters)



>mm_chr13_33517380_33518470
          Length = 1091

 Score = 1263 bits (653), Expect = 0.0
 Identities = 681/695 (97%), Gaps = 8/695 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttatctgtggcatggctttactgaatgacaatcatgatattaaatgtggtgag 63
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttagctgtggcatggctttactgaatgacaatcatgatattaaatgtggtgag 263

                                                                       
Query: 64  actttgtgaaagaatcattctctctgtgtcaatgtgcattatcaagaaagtaaagagaac 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 264 actttgtgaaagaatcattctctctgtgtcaatgtgcattatcaagaaagtagagagaac 323

                                                                       
Query: 124 atgtctataaaatgaaagaatggtaaatctacagacacagagagaagattggttgttaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgtctataaaatgaaagaatggtaaatctacagacacagagagaagattggttgttaca 383

                                                                       
Query: 184 caaacagggaggaaagaatagagtcactgattgacggttatacaatttgtttgaaaggcg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caaacagggaggaaagaatagagtcactgattgacggttatacaatttgtttgaaaggcg 443

                                                                       
Query: 244 attaaagatgattatagcatgtcattgacaggcaatgaagtttctactcatatattatta 303
           |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 444 attaaagaagattatagcatgtcattgacaggcaatgaagtttctacttatatattatta 503

                                                                       
Query: 304 ttattgttaatattattagttttttattatacaaataaatgcaataaaatgctttgaaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttattgttaatattattagttttttattatacaaataaatgcaataaaatgctttgaaaa 563

                                                                       
Query: 364 accaaactaggacagaggggctttgctttggaagataggagcaatcagcccacacccaga 423
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 564 accaaactaggacagaggggctttgctttggaagataggagcaatcagccgacacccaga 623

                                                                       
Query: 424 tgcagctagacaccccagaatatctgacacatcaggaaaaaaggatcacaggatcacagg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgcagctagacaccccagaatatctgacacatcaggaaaaaaggatcacaggatcacagg 683

                                                                       
Query: 484 atcacaggataacaggataa--------aaggctatcaggagggacaggatccagtcaga 535
           ||||||||||||||||||||        ||||||||||||| ||||||||||||||||||
Sbjct: 684 atcacaggataacaggataacaggataaaaggctatcaggaaggacaggatccagtcaga 743

                                                                       
Query: 536 gacagtaagagaagttaaatccagagataatcagatggcaagggacaagataaggaacat 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gacagtaagagaagttaaatccagagataatcagatggcaagggacaagataaggaacat 803

                                                                       
Query: 596 aaggatcagaaatcaatgctagttggtagcatcaaaacctagctctcccaccacagcaag 655
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aaggatcagaaatcaatgctagttggtagcatcaaaacctagctctcccaccacagcaag 863

                                              
Query: 656 ccctagatacctccacacacctgaaaagcaagaat 690
           |||||||||||||||||||||||||||||||||||
Sbjct: 864 ccctagatacctccacacacctgaaaagcaagaat 898


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space:   736161
Effective search space used:   736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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