BAC Information

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BAC

Clone NameB6Ng01-001C14
Chromosome14 (Build37)
Map Location 104,510,711 - 104,617,924
singlet/doubletdoublet
Overlap genenone
Upstream genePhr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
Downstream genePou4f1, 2610206B13Rik, D130009I18Rik, LOC435420, Rbm26, LOC621103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001C14.bB6Ng01-001C14.g
ACCDH839560DH839561
length1,1751,076
definitionDH839560|Mus musculus domesticus DNA, BAC clone: B6Ng01-001C14, 5' end.DH839561|Mus musculus domesticus DNA, BAC clone: B6Ng01-001C14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,510,711 - 104,511,410)(104,616,837 - 104,617,924)
sequence
gaattcttcatctgcttcagagctactaagagctggcttcctgagctcat
ctagtgacgagtatctcctagagacctccgctaatcgatcttttttcttt
tcttttttcttttccttccttctaatctctccccaggtattcttacctga
cctaaacttttcctcgggttcaagacccttggaaaggcctgtatacttat
tttgtgtaccatattttctctttgctcctactctctctccccgctttact
tctgatagcttgtcctgaatttcctctagaatcctccctgccttaaccac
ttgataacatgtgaaaaggaacaaaagggcttctaacactagaaaaaatt
caaggccaaacatattccactttacttctgatagactgtcttgaatttcc
ttagaaagttcaagatcagacttacctcgtaaagctgtactcactggtac
tctcgttccccagctgaaaagttctgaattcatacagttgaatccttctt
aacagtctgctttacgggaacctttattaccgcgacccgcagttctggtt
ctggaatgagggatcttccttgcgccagtcccgagttttttctcgtcccg
gaattcggcaccaattgttattagacgcgttctcacgaccggccaggaaa
gacgcaacaaaccagaatcttctgcggcatagctgtattgcttacatctt
caggagccagagtgcaagaagcaagagagcaagaagcaagagagagagaa
aacgaaaccccgtccctattaaggagaattttccttcgcctaggacgtgt
cactccctgattggctgcagcccatcggccgagttgactcacgaggaagg
cagagcacatggagtgaagaaccaccctcggcacatgcgcagattatttg
tttaccacttagaacacagctgtcagcgccatctttgtaacgcgaatgtg
ggcgcggctcccattattcagatacacatactcttcttctcactgtgtct
catttagagtttttggtcactatatagcagattatgtcattgtctcttta
ttaaatatgaactcttcatagcttgcatatcttacataaagttatctgaa
cgatgtatatcaaaatggcacagtacttaccaagcatactgtacggagat
agccttagtacactgactgtcctaa
gaattcaagtcttcaaaaccaagcatctaataggatgttccgctactggt
gaaaaaaaaaaaagcgaagacctcatctctataatttccttgaaatttta
aacaggtaaaaaccctcagacatatttctccaaaagtcaatccagacctt
tgatccacatgtacaaatcttcccctgcagactttcctaaaactcttggc
ccactttcaactttattacagataatattttaaaatttggttactgttgg
aatgattaacaataattctaaaacaaattcactattttaaagtaactact
gcagtgtatttttcactagcagagagtttggaaaataaataaaccaaggt
taaataaatttcccagggacaatacagtagacataggggagaattttagt
agacatttattaattagtacctttgctacaaaggcacatgctgattagca
tgtgaagattaatccagcatattgtcctagctgcaaactagcacctcagt
aagaatccataaagcactgtgttaatgtaatcatgggaaaaaataatttt
agaagatggaagtgatgaggcaggagaaagctatcttcagggactggttt
aaatgaaaattgcttgagataaataaatgaagtaagcaattacaggtagc
agaattgccccaacacagatatatatgtagtatcttaaaatatgaatcct
gaaacacatcttcatagtttttctataaaaatacataatgcttaattagc
tgttgtgatttgaaagcaacaaatactaattcattatcaaaacatttagt
gtgtgcaacaagccaaacacctgtagcagatgttgagagaaacgtgtgtt
tgcagggatgctattcatagatgtttctatgagaaatctatacatctgga
aacaggaacatcaacctttggtatattggaaagtaaaatagtcaaacctt
tctgtttacagtttaaaatgcattaaaaaaagatgtgtgtcccagatatt
attttctatagagaaagctatgagaagagtggcaagattaggacctgcgt
ttcatctagctcagctgtcgccgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_104510711_104511410
seq2: B6Ng01-001C14.b_535_1217

seq1  TCCTTCTTAACAGTCTGCTTTACGGGAACCTTTATTACCGCGACCCGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTAACAGTCTGCTTTACGGGAACCTTTATTACCGCGACCCGCAG  50

seq1  TTCTGGTTCTGGAATGAGGGATCTTCCTTGCGCCAGTCCCGAGTTTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTTCTGGAATGAGGGATCTTCCTTGCGCCAGTCCCGAGTTTTTTC  100

seq1  TCGTCCCGGAATTCGGCACCAATTGTTATTAGACGCGTTCTCACGACCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCCCGGAATTCGGCACCAATTGTTATTAGACGCGTTCTCACGACCGG  150

seq1  CCAGGAAAGACGCAACAAACCAGAATCTTCTGCGGCAAAGCTTTATTGCT  200
      ||||||||||||||||||||||||||||||||||||| |||| |||||||
seq2  CCAGGAAAGACGCAACAAACCAGAATCTTCTGCGGCATAGCTGTATTGCT  200

seq1  TACATCTTCAGGAGCCAGAGTGCAAGAAGCAAGAGAGCAAGAAGCAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTTCAGGAGCCAGAGTGCAAGAAGCAAGAGAGCAAGAAGCAAGAG  250

seq1  AGAGAGAAAACGAAACCCCGTCCCTATTAAGGAGAATTTTCCTTCGCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAAACGAAACCCCGTCCCTATTAAGGAGAATTTTCCTTCGCCTA  300

seq1  GGACGTGTCACTCCCTGATTGGCTGCAGCCCATCGGCCGAGTTGACTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGTGTCACTCCCTGATTGGCTGCAGCCCATCGGCCGAGTTGACTCAC  350

seq1  GAGGAAGGCAGAGCACATGGAGTGAAGAACCACCCTCGGCACATGCGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGGCAGAGCACATGGAGTGAAGAACCACCCTCGGCACATGCGCAG  400

seq1  ATTATTTGTTTACCACTTAGAACACAGCTGTCAGCGCCATC-TTGTAACG  449
      ||||||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  ATTATTTGTTTACCACTTAGAACACAGCTGTCAGCGCCATCTTTGTAAC-  449

seq1  GCGAATGTGGGCGCGGCTCCCAACAATCCAGATACACAATACTCTTCCTT  499
      ||||||||||||||||||||| |  || ||||||||| |||||||| |||
seq2  GCGAATGTGGGCGCGGCTCCC-ATTATTCAGATACAC-ATACTCTT-CTT  496

seq1  CTCACTGTGTCTCATTTAAGAGTTTTTTGTTCACTATATTAAGCAGATTA  549
      ||||||||||||||||| |||| |||||| |||||||||  |||||||||
seq2  CTCACTGTGTCTCATTT-AGAG-TTTTTGGTCACTATAT--AGCAGATTA  542

seq1  TGTCATTTGTCTCTTTATTAAATATAAACTCTTCATAGC-TGCATATCTT  598
      ||||| ||||||||||||||||||| ||||||||||||| ||||||||||
seq2  TGTCA-TTGTCTCTTTATTAAATATGAACTCTTCATAGCTTGCATATCTT  591

seq1  ACCATAAAGTTATCTATAGGATTTATATAAAAATGGCACCAGGTTACTCA  648
      | |||||||||||||  | ||| ||||| ||||||||| |||  |||| |
seq2  A-CATAAAGTTATCTGAACGATGTATATCAAAATGGCA-CAG--TACTTA  637

seq1  CCATGCAATAACTGTTACAGAAATTAAGCTTAATGAACACTGACTGTCCT  698
      ||| |||   |||| ||| || ||  ||| | | | ||||||||||||||
seq2  CCAAGCA--TACTG-TACGGAGAT--AGCCTTA-GTACACTGACTGTCCT  681

seq1  AA  700
      ||
seq2  AA  683

seq1: chr14_104616837_104617924
seq2: B6Ng01-001C14.g_69_1144 (reverse)

seq1  CCACGGGCGAACAGCTGAGCTAGATGAAACCCAAGTTCTTAAAACCTGCC  50
      |||| |||| |||||||||||||||||||| || || ||  || | ||||
seq2  CCAC-GGCG-ACAGCTGAGCTAGATGAAACGCAGGTCCT--AATCTTGCC  46

seq1  ACTTCCTTCTCAAAAGCTTTTCTCTATAGAAAATATATTCTGGGAACACA  100
      |||  |||||| | ||| |||||||||||||||||   |||||| |||||
seq2  ACT--CTTCTC-ATAGC-TTTCTCTATAGAAAATAATATCTGGG-ACACA  91

seq1  CATCTATTTTTTTAATGCATTTTAAACTGTAAACAGAAAGGTTTGACTAT  150
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATC--TTTTTTTAATGCATTTTAAACTGTAAACAGAAAGGTTTGACTAT  139

seq1  TTTACTTTCCAATATACC-AAGGTTGATGTTCCCTGTTTCCAGATGTATA  199
      |||||||||||||||||| |||||||||||| ||||||||||||||||||
seq2  TTTACTTTCCAATATACCAAAGGTTGATGTT-CCTGTTTCCAGATGTATA  188

seq1  GATTTCTCATAGAAACATCTATGAATAGCATCCCTGCAAACACACGTTTT  249
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GATTTCTCATAGAAACATCTATGAATAGCATCCCTGCAAACACACG-TTT  237

seq1  CTCTCAACATCTGCTACAGGTGTTTGGCTTGTTGCACACACTAAATGTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAACATCTGCTACAGGTGTTTGGCTTGTTGCACACACTAAATGTTT  287

seq1  TGATAATGAATTAGTATTTGTTGCTTTCAAATCACAACAGCTAATTAAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATGAATTAGTATTTGTTGCTTTCAAATCACAACAGCTAATTAAGC  337

seq1  ATTATGTATTTTTATAGAAAAACTATGAAGATGTGTTTCAGGATTCATAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTATTTTTATAGAAAAACTATGAAGATGTGTTTCAGGATTCATAT  387

seq1  TTTAAGATACTACATATATATCTGTGTTGGGGCAATTCTGCTACCTGTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGATACTACATATATATCTGTGTTGGGGCAATTCTGCTACCTGTAA  437

seq1  TTGCTTACTTCATTTATTTATCTCAAGCAATTTTCATTTAAACCAGTCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTACTTCATTTATTTATCTCAAGCAATTTTCATTTAAACCAGTCCC  487

seq1  TGAAGATAGCTTTCTCCTGCCTCATCACTTCCATCTTCTAAAATTATTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATAGCTTTCTCCTGCCTCATCACTTCCATCTTCTAAAATTATTTT  537

seq1  TTCCCATGATTACATTAACACAGTGCTTTATGGATTCTTACTGAGGTGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATGATTACATTAACACAGTGCTTTATGGATTCTTACTGAGGTGCT  587

seq1  AGTTTGCAGCTAGGACAATATGCTGGATTAATCTTCACATGCTAATCAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCAGCTAGGACAATATGCTGGATTAATCTTCACATGCTAATCAGC  637

seq1  ATGTGCCTTTGTAGCAAAGGTACTAATTAATAAATGTCTACTAAAATTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCTTTGTAGCAAAGGTACTAATTAATAAATGTCTACTAAAATTCT  687

seq1  CCCCTATGTCTACTGTATTGTCCCTGGGAAATTTATTTAACCTTGGTTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTATGTCTACTGTATTGTCCCTGGGAAATTTATTTAACCTTGGTTTA  737

seq1  TTTATTTTCCAAACTCTCTGCTAGTGAAAAATACACTGCAGTAGTTACTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTCCAAACTCTCTGCTAGTGAAAAATACACTGCAGTAGTTACTT  787

seq1  TAAAATAGTGAATTTGTTTTAGAATTATTGTTAATCATTCCAACAGTAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAGTGAATTTGTTTTAGAATTATTGTTAATCATTCCAACAGTAAC  837

seq1  CAAATTTTAAAATATTATCTGTAATAAAGTTGAAAGTGGGCCAAGAGTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTTAAAATATTATCTGTAATAAAGTTGAAAGTGGGCCAAGAGTTT  887

seq1  TAGGAAAGTCTGCAGGGGAAGATTTGTACATGTGGATCAAAGGTCTGGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAGTCTGCAGGGGAAGATTTGTACATGTGGATCAAAGGTCTGGAT  937

seq1  TGACTTTTGGAGAAATATGTCTGAGGGTTTTTACCTGTTTAAAATTTCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTTGGAGAAATATGTCTGAGGGTTTTTACCTGTTTAAAATTTCAA  987

seq1  GGAAATTATAGAGATGAGGTCTTCGCTTTTTTTTTTTTCACCAGTAGCGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTATAGAGATGAGGTCTTCGCTTTTTTTTTTTTCACCAGTAGCGG  1037

seq1  AACATCCTATTAGATGCTTGGTTTTGAAGACTTGAATTC  1088
      |||||||||||||||||||||||||||||||||||||||
seq2  AACATCCTATTAGATGCTTGGTTTTGAAGACTTGAATTC  1076