BAC Information

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BAC

Clone NameB6Ng01-001M11
Chromosome14 (Build37)
Map Location 55,179,226 - 55,289,856
singlet/doubletdoublet
Overlap geneJub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1
Upstream geneEG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777, A630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e
Downstream geneLOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001M11.bB6Ng01-001M11.g
ACCDH840004DH840005
length1,038898
definitionDH840004|Mus musculus domesticus DNA, BAC clone: B6Ng01-001M11, 5' end.DH840005|Mus musculus domesticus DNA, BAC clone: B6Ng01-001M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,288,817 - 55,289,856)(55,179,226 - 55,180,123)
sequence
gaattctttttttttttttttttttttttttggtttttcgagtcagggtt
tctctgtgtagttcctggctgtcctggaactcactttgtagaccaggctg
gcctcgaactcagatatccgcctgcctctgccatcacgcccacccctccg
atcccccggctgaattctttatcctatttttcacagactgggctaataag
cctgtgctaccatacctggctttggttttgcgtgtttgtttgtttgtttg
ctagctatgaggcagggtctctttattaagtgactctggctgtcctggaa
ctcattacatagactggcctcaaattcacagaaatgtgcctgtcactgcc
ttgttgctgggattgaaggcatggctgtcacacccagccagtgctctgct
tttgtatttatggagaatagcatctctgcatttagctttaagctttattt
acttcgtaatttaacctaattcaggtcagtgaattatgacattgatgaga
ttgtgtcatttagcccatagtattgtttagggctgggggcacggcggggg
tgggggcagtgtttttgttttttaagatagggtttcctggatcctagaac
tcaattagtagtccatgctggcctcgaactcacatcctcctgcctctgcc
ttctgagtgctggattaaaggtgtgtgccactgccatccatccagctagt
agtgtcttaggatgcctcctatgttggtgaaagtgtggattgtcactgta
tatcacatagatcctgtataaacaatcttaatgcaagtgatataaatatt
tatttactcagatatgaaattatatcatttaagagatttcgttaaccaag
tggtcatggaattaaacatttataaaacatttgtaatcttgctagttggt
ttattagttttagtttggtgtgtctgttacaaaagcaaagcctagttcac
tttaaattgctggtaattggaaaacaacagcagattctgggtcagcttta
acaaccaggattgttcacactggcctaaatactgttca
gaattccaggccaacatggacgggcgaaactctgtctcaagaaaacaaaa
caaacaaacaaaaaaaaaatcaaagaacaaacaaaacaaaacaacaacaa
caacaataacaacaaaacccagatgttctacagcacccacgaagaccggc
cagacttagtgactcccaataaactaaatcgccaacaaagcagattacaa
taacaactgataacaagaacaagctgccttcaggatggcttattaaatca
attgttcagagaccgttcaaagcatgagtcgttccacgctaagagtacct
gcattcgtgatggacagaggaacaagtttccaggatgacaacattacagc
gtggtcggctttgggactggcttcaaggcattcactggaaatgagagtat
tcagagtgacaaagattcatgattaagctggaaaatgtcatggtcctttg
taagtacatgatttgagaagaaaacaagaagataaaagaaaatatgtaat
caacctatgacatcgaatggaaatttcaagacaaatgtttataatgtacc
atttttgtaagaacttagcgtgcttctaaggggattgtaagccatggccc
ttaaaacctctcaggcaggctggctcttcatggaaacttgttacacagat
tgcaatgagccagggttttactctgagacacgactgagagctggaatata
aactagccctgatagaaatttcagatctcaaagaaaagcaaagaaatttg
gctccaaaataggacagattggaacattttttgccaaaggactatgaggc
cgtgaagggaaatgattcgggagaggagaactgggaaccttttgaaagcc
aggcatgaagtagagggcaccccattcctgttgttatctgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_55288817_55289856
seq2: B6Ng01-001M11.b_43_1080 (reverse)

seq1  TGAACAGTATTTAAGCCAGTGTGAACAATCCTGGTTGTTTAAGCTGACCC  50
      ||||||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  TGAACAGTATTTAGGCCAGTGTGAACAATCCTGGTTGTTAAAGCTGACCC  50

seq1  AGGATCTGCTGTTGTTTTCCATATACCAGCAATTTAAAGTGAACTAGGCT  100
      || ||||||||||||||||||  |||||||||||||||||||||||||||
seq2  AGAATCTGCTGTTGTTTTCCAATTACCAGCAATTTAAAGTGAACTAGGCT  100

seq1  TTGCTTTTGTAACAGACACAACCAAACTAAAACTAATAAAACCAACTAGC  150
      ||||||||||||||||||| ||||||||||||||||| ||||||||||||
seq2  TTGCTTTTGTAACAGACAC-ACCAAACTAAAACTAAT-AAACCAACTAGC  148

seq1  AAGATTACAAATGTTTTATAAATGTTTAATTCCATGACCACTTGGTTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTACAAATGTTTTATAAATGTTTAATTCCATGACCACTTGGTTAAC  198

seq1  GAAATCTCTTAAATGATATAATTTCATATCTGAGTAAATAAATATTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTCTTAAATGATATAATTTCATATCTGAGTAAATAAATATTTATA  248

seq1  TCACTTGCATTAAGATTGTTTATACAGGATCTATGTGATATACAGTGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGCATTAAGATTGTTTATACAGGATCTATGTGATATACAGTGACA  298

seq1  ATCCACACTTTCACCAACATAGGAGGCATCCTAAGACACTACTAGCTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACACTTTCACCAACATAGGAGGCATCCTAAGACACTACTAGCTGGA  348

seq1  TGGATGGCAGTGGCACACACCTTTAATCCAGCACTCAGAAGGCAGAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGCAGTGGCACACACCTTTAATCCAGCACTCAGAAGGCAGAGGCA  398

seq1  GGAGGATGTGAGTTCGAGGCCAGCATGGACTACTAATTGAGTTCTAGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATGTGAGTTCGAGGCCAGCATGGACTACTAATTGAGTTCTAGGAT  448

seq1  CCAGGAAACCCTATCTTAAAAAACAAAAACACTGCCCCCACCCCCGCCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAACCCTATCTTAAAAAACAAAAACACTGCCCCCACCCCCGCCGT  498

seq1  GCCCCCAGCCCTAAACAATACTATGGGCTAAATGACACAATCTCATCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCAGCCCTAAACAATACTATGGGCTAAATGACACAATCTCATCAAT  548

seq1  GTCATAATTCACTGACCTGAATTAGGTTAAATTACGAAGTAAATAAAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAATTCACTGACCTGAATTAGGTTAAATTACGAAGTAAATAAAGCT  598

seq1  TAAAGCTAAATGCAGAGATGCTATTCTCCATAAATACAAAAGCAGAGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTAAATGCAGAGATGCTATTCTCCATAAATACAAAAGCAGAGCAC  648

seq1  TGGCTGGGTGTGACAGCCATGCCTTCAATCCCAGCAACAAGGCAGTGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGGTGTGACAGCCATGCCTTCAATCCCAGCAACAAGGCAGTGACA  698

seq1  GGCACATTTCTGTGAATTTGAGGCCAGTCTATGTAATGAGTTCCAGGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATTTCTGTGAATTTGAGGCCAGTCTATGTAATGAGTTCCAGGACA  748

seq1  GCCAGAGTCACTTAATAAAGAGACCCTGCCTCATAGCTAGCAAACAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGTCACTTAATAAAGAGACCCTGCCTCATAGCTAGCAAACAAACA  798

seq1  AACAAACACGCAAAACCAAAGCCAGGTATGGTAGCACAGGCTTATTAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACACGCAAAACCAAAGCCAGGTATGGTAGCACAGGCTTATTAGCC  848

seq1  CAGTCTGTGAAAAATAGGATAAAGAATTCAGCCGGGGGATCGGAGGGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGTGAAAAATAGGATAAAGAATTCAGCCGGGGGATCGGAGGGGTG  898

seq1  GGCGTGATGGCAGAGGCAGGCGGATATCTGAGTTCGAGGCCAGCCTGGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGATGGCAGAGGCAGGCGGATATCTGAGTTCGAGGCCAGCCTGGTC  948

seq1  TACAAAGTGAGTTCCAGGACAGCCAGGAACTACACAGAGAAACCCTGACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGTGAGTTCCAGGACAGCCAGGAACTACACAGAGAAACCCTGACT  998

seq1  CGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAGAATTC  1040
      ||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAGAATTC  1038

seq1: chr14_55179226_55180123
seq2: B6Ng01-001M11.g_68_965

seq1  GAATTCCAGGCCAACATGGACGGGCGAAACTCTGTCTCAAGAAAACAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAACATGGACGGGCGAAACTCTGTCTCAAGAAAACAAAA  50

seq1  CAAACAAACAAAAAAAAAATCAAAGAACAAACAAAACAAAACAACAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAAAAAAAAAATCAAAGAACAAACAAAACAAAACAACAACAA  100

seq1  CAACAATAACAACAAAACCCAGATGTTCTACAGCACCCACGAAGACCGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATAACAACAAAACCCAGATGTTCTACAGCACCCACGAAGACCGGC  150

seq1  CAGACTTAGTGACTCCCAATAAACTAAATCGCCAACAAAGCAGATTACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTAGTGACTCCCAATAAACTAAATCGCCAACAAAGCAGATTACAA  200

seq1  TAACAACTGATAACAAGAACAAGCTGCCTTCAGGATGGCTTATTAAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACTGATAACAAGAACAAGCTGCCTTCAGGATGGCTTATTAAATCA  250

seq1  ATTGTTCAGAGACCGTTCAAAGCATGAGTCGTTCCACGCTAAGAGTACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCAGAGACCGTTCAAAGCATGAGTCGTTCCACGCTAAGAGTACCT  300

seq1  GCATTCGTGATGGACAGAGGAACAAGTTTCCAGGATGACAACATTACAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCGTGATGGACAGAGGAACAAGTTTCCAGGATGACAACATTACAGC  350

seq1  GTGGTCGGCTTTGGGACTGGCTTCAAGGCATTCACTGGAAATGAGAGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCGGCTTTGGGACTGGCTTCAAGGCATTCACTGGAAATGAGAGTAT  400

seq1  TCAGAGTGACAAAGATTCATGATTAAGCTGGAAAATGTCATGGTCCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTGACAAAGATTCATGATTAAGCTGGAAAATGTCATGGTCCTTTG  450

seq1  TAAGTACATGATTTGAGAAGAAAACAAGAAGATAAAAGAAAATATGTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACATGATTTGAGAAGAAAACAAGAAGATAAAAGAAAATATGTAAT  500

seq1  CAACCTATGACATCGAATGGAAATTTCAAGACAAATGTTTATAATGTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTATGACATCGAATGGAAATTTCAAGACAAATGTTTATAATGTACC  550

seq1  ATTTTTGTAAGAACTTAGCGTGCTTCTAAGGGGATTGTAAGCCATGGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTAAGAACTTAGCGTGCTTCTAAGGGGATTGTAAGCCATGGCCC  600

seq1  TTAAAACCTCTCAGGCAGGCTGGCTCTTCATGGAAACTTGTTACACAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACCTCTCAGGCAGGCTGGCTCTTCATGGAAACTTGTTACACAGAT  650

seq1  TGCAATGAGCCAGGGTTTTACTCTGAGACACGACTGAGAGCTGGAATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGAGCCAGGGTTTTACTCTGAGACACGACTGAGAGCTGGAATATA  700

seq1  AACTAGCCCTGATAGAAATTTCAGATCTCAAAGAAAAGCAAAGAAATTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGCCCTGATAGAAATTTCAGATCTCAAAGAAAAGCAAAGAAATTTG  750

seq1  GCTCCAAAATAGGACAGATTGGAACATTTTTTGCCAAAGGACTATGAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAAAATAGGACAGATTGGAACATTTTTTGCCAAAGGACTATGAGGC  800

seq1  CGTGAAGGGAAATGATTCGGGAGAGGAGAACTGGGAACCTTTTGAAAAGC  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CGTGAAGGGAAATGATTCGGGAGAGGAGAACTGGGAACCTTTTG-AAAGC  849

seq1  CAGGCATGAAGTAGAGGGCACCCCATTCCTGTTG-TATCTGTGTGTGTG  898
      |||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAGGCATGAAGTAGAGGGCACCCCATTCCTGTTGTTATCTGTGTGTGTG  898