BAC Information

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BAC

Clone NameB6Ng01-002G11
Chromosome14 (Build37)13 (Build37)
Map Location 27,969,184 - 27,970,41031,869,889 - 31,869,966
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039503, LOC100039246, LOC100039257, LOC100039280, LOC100039293, LOC100039527, LOC100039538, 4933413J09Rik, Slmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1, Il17rd
Downstream geneLOC665333, Arhgef3, LOC100040147, Ccdc66, LOC665370, Erc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002G11.bB6Ng01-002G11.g
ACCDH840441DH840442
length1,21884
definitionDH840441|Mus musculus domesticus DNA, BAC clone: B6Ng01-002G11, 5' end.DH840442|Mus musculus domesticus DNA, BAC clone: B6Ng01-002G11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(27,969,184 - 27,970,410)(31,869,889 - 31,869,966)
sequence
gaattctctttgtacccgagggaacgtcagaaactctcacaacgaaataa
tatctggtcatagtcactgtgtgcagcaggaaacttcactcgctggggtt
ttatcgcatagaaaacttatgatcttgggcccctagcagatcagttggca
tcaagaagaggaaggaactggagaggatggccataagtactgtgagaata
ggtgtttttgtaataaagttgcttggttaaaagacggacgagatgtccat
agatctcaggagccaaactgtactatgcggagaaccacgtagccagctgg
gaaggccctgtcctcacaaagcaggctggtcccaggccagactgtagtcc
tgcatcgtgcaagctagagtcatctgagagtcaactgaggaaatgcatcc
agaagactgggctgtagggcaagctaaggagggcacttttcttagtgact
agagtgaaaagggcccagccgagtgtggatggggccacccacgggctggt
ggttctggattctataagaaaacaggttgagcaaaccagtaagcagcacc
cccaatacacacacacacacacacacacacacacacagcctctgcatcag
ctcctggctccaggttcctgccctgatcttttgatgatacagtacagtgg
aagtataagctgaataagccctttccttcctctttggtcatggtgtttca
tcatagcaatagcaaccttaagacaggggatgtgtacaatcgtgttttcc
actgacctacaaaaataaataaataaaataaataaatagggcctttccac
tgacccatgttcaccaaggtatgcaaccgctcctcatcccaactcaactc
tcaattctctgagagtgccgattttatctatctttttgcttctagtacac
ttagtgatatacaataaatgcccacgggatgactcaacaactcaaactag
tgatgggctagttctccccagggacttcagataataagcgctagttgtga
aatagagggatcagctttctgggacgctaatccacgagagtagctttgat
gctgtggaaagagccacagttagtcgaacttcagatctgctcctgcagct
ggaatctggaaaattatttctcaatattaggcttgttgcttgaatggtaa
taaggcatggagacagaaaatctaggaatttctttcagcttcgtgtgttt
aagattcgcttttttaaa
aagagaaaccctgtctcaaaaagaaaaaggaaggaaggaaggaaggaagg
aaggaaggaaggaaggaaggaaggaaggaaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_27969184_27970410
seq2: B6Ng01-002G11.b_47_1264 (reverse)

seq1  TTTAAAAAACTGAATCTTTAAAAAACACACGGAGCTGGAAGAAA-TCCTA  49
      |||||||||  |||||||    ||||||||| ||||| |||||| |||||
seq2  TTTAAAAAAGCGAATCTT----AAACACACGAAGCTGAAAGAAATTCCTA  46

seq1  GATTTACTGCTTTCATGCCTTATTACCAATTCAGCACACAGCCTAATATT  99
      ||||| |||  | ||||||||||||||| |  ||||   |||||||||||
seq2  GATTTTCTGTCTCCATGCCTTATTACCATTCAAGCAACAAGCCTAATATT  96

seq1  GAGGAAATAATTTTCCAGATTCCAGCTGCAGGAGCAGATCCCTGAGGTCT  149
      || ||||||||||||||||||||||||||||||||||||  |||| ||  
seq2  GA-GAAATAATTTTCCAGATTCCAGCTGCAGGAGCAGAT--CTGAAGTTC  143

seq1  GACTAACTGTGGCTCTTTCCACAGCATCAAAGCTACCTCTCGTGGGATTA  199
      ||||||||||||||||||||||||||||||||||| ||||||| ||||||
seq2  GACTAACTGTGGCTCTTTCCACAGCATCAAAGCTA-CTCTCGT-GGATTA  191

seq1  GCCGGTCCCAGAAGCCTGATCCCTCTTATTTCACAACTAGCGCTTATTAT  249
      ||  |||||||||  |||||||||| ||||||||||||||||||||||||
seq2  GC--GTCCCAGAAAGCTGATCCCTC-TATTTCACAACTAGCGCTTATTAT  238

seq1  CTGAAGTCCCTGGGGGAGAACTAGCCCATCACTAGTTTGAGTTGTTGAGT  299
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTCCCT-GGGGAGAACTAGCCCATCACTAGTTTGAGTTGTTGAGT  287

seq1  CATCCCGTGGGCATTTATTGTATATCACTAAGTGTACTAGAAGC-AAAAG  348
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CATCCCGTGGGCATTTATTGTATATCACTAAGTGTACTAGAAGCAAAAAG  337

seq1  ATAGATAAAATCGGCACTCTCAGAGAATTGAGAGTTGAGTTGGGATGAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAAAATCGGCACTCTCAGAGAATTGAGAGTTGAGTTGGGATGAGG  387

seq1  AGCGGTTGCATA-CTTGGTGAACATGGGTCAGTGGAAAGGCCCTATTTAT  447
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGCGGTTGCATACCTTGGTGAACATGGGTCAGTGGAAAGGCCCTATTTAT  437

seq1  TTA-TTTATTTATTTATTTTTGTAGGTCAGTGGAAAACACGATTGTACAC  496
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATTTATTTATTTTTGTAGGTCAGTGGAAAACACGATTGTACAC  487

seq1  ATCCCCTGTCTTAAGGTTGCTATTGCTATGATGAAACACCATGACCAAAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTGTCTTAAGGTTGCTATTGCTATGATGAAACACCATGACCAAAG  537

seq1  AGGAAGGAAAGGGCTTATTCAGCTTATACTTCCACTGTACTGTATCATCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAAGGGCTTATTCAGCTTATACTTCCACTGTACTGTATCATCA  587

seq1  AAAGATCAGGGCAGGAACCTGGAGCCAGGAGCTGATGCAGAGGCTGTGTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCAGGGCAGGAACCTGGAGCCAGGAGCTGATGCAGAGGCTGTGTG  637

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTATTGGGGGTGCTGCTTACTGGTTTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTATTGGGGGTGCTGCTTACTGGTTTG  687

seq1  CTCAACCTGTTTTCTTATAGAATCCAGAACCACCAGCCCGTGGGTGGCCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACCTGTTTTCTTATAGAATCCAGAACCACCAGCCCGTGGGTGGCCC  737

seq1  CATCCACACTCGGCTGGGCCCTTTTCACTCTAGTCACTAAGAAAAGTGCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACACTCGGCTGGGCCCTTTTCACTCTAGTCACTAAGAAAAGTGCC  787

seq1  CTCCTTAGCTTGCCCTACAGCCCAGTCTTCTGGATGCATTTCCTCAGTTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTAGCTTGCCCTACAGCCCAGTCTTCTGGATGCATTTCCTCAGTTG  837

seq1  ACTCTCAGATGACTCTAGCTTGCACGATGCAGGACTACAGTCTGGCCTGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAGATGACTCTAGCTTGCACGATGCAGGACTACAGTCTGGCCTGG  887

seq1  GACCAGCCTGCTTTGTGAGGACAGGGCCTTCCCAGCTGGCTACGTGGTTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCCTGCTTTGTGAGGACAGGGCCTTCCCAGCTGGCTACGTGGTTC  937

seq1  TCCGCATAGTACAGTTTGGCTCCTGAGATCTATGGACATCTCGTCCGTCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCATAGTACAGTTTGGCTCCTGAGATCTATGGACATCTCGTCCGTCT  987

seq1  TTTAACCAAGCAACTTTATTACAAAAACACCTATTCTCACAGTACTTATG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACCAAGCAACTTTATTACAAAAACACCTATTCTCACAGTACTTATG  1037

seq1  GCCATCCTCTCCAGTTCCTTCCTCTTCTTGATGCCAACTGATCTGCTAGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCTCTCCAGTTCCTTCCTCTTCTTGATGCCAACTGATCTGCTAGG  1087

seq1  GGCCCAAGATCATAAGTTTTCTATGCGATAAAACCCCAGCGAGTGAAGTT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAAGATCATAAGTTTTCTATGCGATAAAACCCCAGCGAGTGAAGTT  1137

seq1  TCCTGCTGCACACAGTGACTATGACCAGATATTATTTCGTTGTGAGAGTT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTGCACACAGTGACTATGACCAGATATTATTTCGTTGTGAGAGTT  1187

seq1  TCTGACGTTCCCTCGGGTACAAAGAGAATTC  1227
      |||||||||||||||||||||||||||||||
seq2  TCTGACGTTCCCTCGGGTACAAAGAGAATTC  1218

seq1: chr13_31869889_31869966
seq2: B6Ng01-002G11.g_75_157

seq1  AGAGAAACCCTGTCTCA-----AAAAAGGAAGGAAGGAAGGAAGGAAGGA  45
      |||||||||||||||||     ||||||||||||||||||||||||||||
seq2  AGAGAAACCCTGTCTCAAAAAGAAAAAGGAAGGAAGGAAGGAAGGAAGGA  50

seq1  AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA  78
      |||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA  83