BAC Information

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BAC

Clone NameB6Ng01-002M20
Chromosome14 (Build37)
Map Location 104,061,499 - 104,225,692
singlet/doubletdoublet
Overlap geneSlain1, Ednrb
Upstream geneKctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797, Scel, LOC100043448
Downstream genePou4f1, 2610206B13Rik, D130009I18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002M20.bB6Ng01-002M20.g
ACCDH840716DH840717
length1,1301,150
definitionDH840716|Mus musculus domesticus DNA, BAC clone: B6Ng01-002M20, 5' end.DH840717|Mus musculus domesticus DNA, BAC clone: B6Ng01-002M20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,061,499 - 104,062,610)(104,224,525 - 104,225,692)
sequence
gaattcactacctacccatgtagccaagccgccctggacctggtctcctg
tgctagccagccatgctgagactgaggcctgggctgcacacctgtctagg
cttggtttcttctgtaggcacatttggctgcccttcttcaggattctctt
caggttaactcttccagggccggttcagattctcagttcttaaagggtag
ttaagcacctgcccaccgcacaagatcacaaatcctggaaaatgctgtga
gctttgcagaaagttcccaagctgtggcttgaagctatgagaataaacta
acaatctagcccttctgaagaaaatagagagggaagagtgttttgtgaga
tattcttaaggagataacaaccacactgtcgctgtcttaaatattccatt
gaaataatgttgaaagtaaaataattgctcttttcctagtatctctaagt
cccatgtctgttggtataaaggtagttaataaaggatggagggactttta
gtttttgagcactgatttcactgtacagccttagggaaagttctgtccat
gattccttggtttgaagattggatggagaatgtttgttctctattcggag
gaaacctgttttgttcattcttaaatgtctgacttttctgagcagataaa
ggatctgcatcccagcgttatcttgagttatcagtgcctgatacggcttt
gagcacacgttaaatgttggccgttgggttttacagttgactgactggat
gcatttaggtttttttttagatgtacacacacaccgaagtttccattgaa
cagttggtattgtcagtgacatcctactcatcaagacaaaagcccacatg
tcatatggtggtgctcattattgtgagccccgtggatgatgtgtaaatct
gttttgttcactgctgtagccctctcatggagagtagttgccatggcacc
gtgggtgttgggatgctaattactgaatggatgaagtctggggctaggaa
ctgtaactagtgactaagcctcagtggcttcagctttactccagcctctg
tggggagcttctagtggggtcacggtggtaaggaaaggaaccgcctttga
aagaacgttccctgggcccagttccaaaga
gaattccgtagccctaagtgctgaggtagctcacacaactggctcagact
gaaagcacactgaagctcagaagtttcactgctcaaaacggttttgtgcc
aattttcccccagaaaagaaaatcttgagaaatctccaagacaaacagca
cccctgaagcttcaggtagccctctggtgtctgacttggtgtgaatgttc
caaccatcccaccttgggtcacagaagtcctggctggctcaccgtatttt
tatgcaaaacccgaataatagtcaggttcctaatatgcagtacacgctga
aaacataaagaagtagaagctcagagaaagttcataggggaagtaacagc
taggaagggtaactataggacctcaaaggctgctccagccatggttgtag
acgcgctaagagcagatcacaggcataaaacttggtagcctcacacattt
ttagagtcaagatttctggaattcttgtcaccagtgaatatctggtaacc
catagtgatgtacagttctgaaaaccaaacttgtaaatttccaattacct
ataacatgcttagtttattttttcccaaaaataaatttaaaaaaatcatt
aatttcaccacgagggcttggttatcatggccgcacgtggtccagcccat
accacttcgtacagacgtacagtctttttatttcccttgaccacattctg
agcaacaagttacattttaaaaatcacattacaccattttcctgttcttt
tcctagcatactctatggctggtatgctcattgctttatccaactacaga
cttgggttgtgtcctcagagacatcttactgggaagcttatggagaaaac
acatcccaccaacactctcctaatatggctacttctgtttggacatcatc
tcaagtactgatgcgttgtgtcttccttgtatatgtaagctctacagaaa
ccagtagtgcgccttgtactcagaatattctttatggtgaatattcaatg
cccgtggtgaatgaactatgactagttaatttactaatccagaagctctc
atacaaattatagaatctcctagtcatacacatatttatatgtcttaaaa
catgaataactgtacgttgataattgtatgatttatattaagatccaatt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_104061499_104062610
seq2: B6Ng01-002M20.b_47_1176

seq1  GAATTCACTACCTACCCATGTAGCCAAGCCGCCCTGGACCTGGTCTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTACCTACCCATGTAGCCAAGCCGCCCTGGACCTGGTCTCCTG  50

seq1  TGCTAGCCAGCCATGCTGAGACTGAGGCCTGGGCTGCACACCTGTCTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCCAGCCATGCTGAGACTGAGGCCTGGGCTGCACACCTGTCTAGG  100

seq1  CTTGGTTTCTTCTGTAGGCACATTTGGCTGCCCTTCTTCAGGATTCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTTCTTCTGTAGGCACATTTGGCTGCCCTTCTTCAGGATTCTCTT  150

seq1  CAGGTTAACTCTTCCAGGGCCGGTTCAGATTCTCAGTTCTTAAAGGGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTAACTCTTCCAGGGCCGGTTCAGATTCTCAGTTCTTAAAGGGTAG  200

seq1  TTAAGCACCTGCCCACCGCACAAGATCACAAATCCTGGAAAATGCTGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCACCTGCCCACCGCACAAGATCACAAATCCTGGAAAATGCTGTGA  250

seq1  GCTTTGCAGAAAGTTCCCAAGCTGTGGCTTGAAGCTATGAGAATAAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCAGAAAGTTCCCAAGCTGTGGCTTGAAGCTATGAGAATAAACTA  300

seq1  ACAATCTAGCCCTTCTGAAGAAAATAGAGAGGGAAGAGTGTTTTGTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTAGCCCTTCTGAAGAAAATAGAGAGGGAAGAGTGTTTTGTGAGA  350

seq1  TATTCTTAAGGAGATAACAACCACACTGTCGCTGTCTTAAATATTCCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTAAGGAGATAACAACCACACTGTCGCTGTCTTAAATATTCCATT  400

seq1  GAAATAATGTTGAAAGTAAAATAATTGCTCTTTTCCTAGTATCTCTAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAATGTTGAAAGTAAAATAATTGCTCTTTTCCTAGTATCTCTAAGT  450

seq1  CCCATGTCTGTTGGTATAAAGGTAGTTAATAAAGGATGGAGGGACTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTCTGTTGGTATAAAGGTAGTTAATAAAGGATGGAGGGACTTTTA  500

seq1  GTTTTTGAGCACTGATTTCACTGTACAGCCTTAGGGAAAGTTCTGTCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGAGCACTGATTTCACTGTACAGCCTTAGGGAAAGTTCTGTCCAT  550

seq1  GATTCCTTGGTTTGAAGATTGGATGGAGAATGTTTGTTCTCTATTCGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTTGGTTTGAAGATTGGATGGAGAATGTTTGTTCTCTATTCGGAG  600

seq1  GAAACCTGTTTTGTTCATTCTTAAATGTCTGACTTTTCTGAGCAGATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTGTTTTGTTCATTCTTAAATGTCTGACTTTTCTGAGCAGATAAA  650

seq1  GGATCTGCATCCCAGCGTTATCTTGAGTTATCAGTGCCTGATACGGCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTGCATCCCAGCGTTATCTTGAGTTATCAGTGCCTGATACGGCTTT  700

seq1  GAGCACACGTTAAATGTTGGCCGTTGGGTTTTACAGTTGACTGACTGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACACGTTAAATGTTGGCCGTTGGGTTTTACAGTTGACTGACTGGAT  750

seq1  GCATTTAGG-TTTTTTTTAGATGTACACACACACCGAAGTTTCCATTGAA  799
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAGGTTTTTTTTTAGATGTACACACACACCGAAGTTTCCATTGAA  800

seq1  CAGTTGGTATTGTCAGTGACATCCTACTCATCAAGACAAAAGCCCACATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGTATTGTCAGTGACATCCTACTCATCAAGACAAAAGCCCACATG  850

seq1  TCATATGGTGGTGCTCATTATTGTGAGCCCCGTGGATGATGCTTAAATCT  899
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  TCATATGGTGGTGCTCATTATTGTGAGCCCCGTGGATGATGTGTAAATCT  900

seq1  GTTTTGTTCACTGCTGTAGCCCTCTCATGGAGAGTAGTTGCCATGGCACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTCACTGCTGTAGCCCTCTCATGGAGAGTAGTTGCCATGGCACC  950

seq1  GTGGGTGTT-GGATGCTAATTACTGAATGGATG-AGTCTGGGGCTAGGAA  997
      ||||||||| ||||||||||||||||||||||| ||||||||||||||||
seq2  GTGGGTGTTGGGATGCTAATTACTGAATGGATGAAGTCTGGGGCTAGGAA  1000

seq1  CTGTAACTAGTGACT-AGGCTCAGT-GCTTCAGCTTTACT-CAG-CTCTG  1043
      ||||||||||||||| || |||||| |||||||||||||| ||| |||||
seq2  CTGTAACTAGTGACTAAGCCTCAGTGGCTTCAGCTTTACTCCAGCCTCTG  1050

seq1  T-GTGAGCTTCTAGT-GTGTCAC-GTGGTA--GGAAGGAGC--GCTTTGA  1086
      | | ||||||||||| | ||||| ||||||  | ||||| |   ||||||
seq2  TGGGGAGCTTCTAGTGGGGTCACGGTGGTAAGGAAAGGAACCGCCTTTGA  1100

seq1  AAG-ACG-TCGCTGGG-CCAGTT-CAAAGA  1112
      ||| ||| || ||||| |||||| ||||||
seq2  AAGAACGTTCCCTGGGCCCAGTTCCAAAGA  1130

seq1: chr14_104224525_104225692
seq2: B6Ng01-002M20.g_70_1219 (reverse)

seq1  AATTGGATCTTTATATGAAATCATACAATGTACAAAAGGTACCAGTTGAT  50
      ||||||||||| |||| ||||||||||||   |  || ||| ||||| ||
seq2  AATTGGATCTTAATAT-AAATCATACAATTATC--AACGTA-CAGTT-AT  45

seq1  CCATGTTTTAAAAGACATTATTATATTATGTTGTATTGACTAGGTAGATT  100
       ||||||||  |||||| |||   | |||| |||| |||||||| |||||
seq2  TCATGTTTT--AAGACA-TAT--AAATATG-TGTA-TGACTAGG-AGATT  87

seq1  CTATAATGTGTATGAGAGCTTCTGGATTAGTAAATTAACTAGTCATTAGT  150
      ||||||| ||||||||||||||||||||||||||||||||||||| ||||
seq2  CTATAATTTGTATGAGAGCTTCTGGATTAGTAAATTAACTAGTCA-TAGT  136

seq1  TCATTCAACCAACGGGCATTGAATATTCACCATAAAGAATATTCTGAGTA  200
      |||||||  | |||||||||||||||||||||||||||||||||||||||
seq2  TCATTCA--CCACGGGCATTGAATATTCACCATAAAGAATATTCTGAGTA  184

seq1  CAAGGCGCACTACTGGTTTCTGTAGAGCTTACATATAACAAGGAAGACAC  250
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAAGGCGCACTACTGGTTTCTGTAGAGCTTACATAT-ACAAGGAAGACAC  233

seq1  AAACGCATCAGTACTTGAGATGATGTCCAAACAGAAGTAGCCATATTAGG  300
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AACGCATCAGTACTTGAGATGATGTCCAAACAGAAGTAGCCATATTAGG  282

seq1  AGAGTGTTGGTGGGATGTGTTTTCTCCATAAGCTTCCCAGTAAGATGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTTGGTGGGATGTGTTTTCTCCATAAGCTTCCCAGTAAGATGTCT  332

seq1  CTGAGGACACAACCCAAGTCTGTAGTTGGATAAAGCAATGAGCATACCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGACACAACCCAAGTCTGTAGTTGGATAAAGCAATGAGCATACCAG  382

seq1  CCATAGAGTATGCTAGGAAAAGAACAGGAAAATGGTGTAATGTGATTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGAGTATGCTAGGAAAAGAACAGGAAAATGGTGTAATGTGATTTTT  432

seq1  AAAATGTAACTTGTTGCTCAGAATGTGGTCAAGGGAAATAAAAAGACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTAACTTGTTGCTCAGAATGTGGTCAAGGGAAATAAAAAGACTGT  482

seq1  ACGTCTGTACGAAGTGGTATGGGCTGGACCACGTGCGGCCATGATAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTGTACGAAGTGGTATGGGCTGGACCACGTGCGGCCATGATAACCA  532

seq1  AGCCCTCGTGGTGAAATTAATGATTTTTTTAAATTTATTTTTGGGAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCGTGGTGAAATTAATGATTTTTTTAAATTTATTTTTGGGAAAAA  582

seq1  ATAAACTAAGCATGTTATAGGTAATTGGAAATTTACAAGTTTGGTTTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTAAGCATGTTATAGGTAATTGGAAATTTACAAGTTTGGTTTTCA  632

seq1  GAACTGTACATCACTATGGGTTACCAGATATTCACTGGTGACAAGAATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTACATCACTATGGGTTACCAGATATTCACTGGTGACAAGAATTC  682

seq1  CAGAAATCTTGACTCTAAAAATGTGTGAGGCTACCAAGTTTTATGCCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCTTGACTCTAAAAATGTGTGAGGCTACCAAGTTTTATGCCTGT  732

seq1  GATCTGCTCTTAGCGCGTCTACAACCATGGCTGGAGCAGCCTTTGAGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCTCTTAGCGCGTCTACAACCATGGCTGGAGCAGCCTTTGAGGTC  782

seq1  CTATAGTTACCCTTCCTAGCTGTTACTTCCCCTATGAACTTTCTCTGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGTTACCCTTCCTAGCTGTTACTTCCCCTATGAACTTTCTCTGAGC  832

seq1  TTCTACTTCTTTATGTTTTCAGCGTGTACTGCATATTAGGAACCTGACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTTCTTTATGTTTTCAGCGTGTACTGCATATTAGGAACCTGACTA  882

seq1  TTATTCGGGTTTTGCATAAAAATACGGTGAGCCAGCCAGGACTTCTGTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCGGGTTTTGCATAAAAATACGGTGAGCCAGCCAGGACTTCTGTGA  932

seq1  CCCAAGGTGGGATGGTTGGAACATTCACACCAAGTCAGACACCAGAGGGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGTGGGATGGTTGGAACATTCACACCAAGTCAGACACCAGAGGGC  982

seq1  TACCTGAAGCTTCAGGGGTGCTGTTTGTCTTGGAGATTTCTCAAGATTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGAAGCTTCAGGGGTGCTGTTTGTCTTGGAGATTTCTCAAGATTTT  1032

seq1  CTTTTCTGGGGGAAAATTGGCACAAAACCGTTTTGAGCAGTGAAACTTCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGGGGGAAAATTGGCACAAAACCGTTTTGAGCAGTGAAACTTCT  1082

seq1  GAGCTTCAGTGTGCTTTCAGTCTGAGCCAGTTGTGTGAGCTACCTCAGCA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTCAGTGTGCTTTCAGTCTGAGCCAGTTGTGTGAGCTACCTCAGCA  1132

seq1  CTTAGGGCTACGGAATTC  1168
      ||||||||||||||||||
seq2  CTTAGGGCTACGGAATTC  1150