BAC Information

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BAC

Clone NameB6Ng01-002P07
Chromosome14 (Build37)
Map Location 103,680,085 - 103,756,264
singlet/doubletdoublet
Overlap genePhr1
Upstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441
Downstream geneLOC100043797, Scel, LOC100043448, Slain1, Ednrb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002P07.bB6Ng01-002P07.g
ACCDH840824DH840825
length1,1321,100
definitionDH840824|Mus musculus domesticus DNA, BAC clone: B6Ng01-002P07, 5' end.DH840825|Mus musculus domesticus DNA, BAC clone: B6Ng01-002P07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,680,085 - 103,681,220)(103,755,155 - 103,756,264)
sequence
gaattcaaaagtatgtctgcatttctggattctttattctggatcaagct
tgaagtttggggggctgatttttaatgaaaacagactaggaaaggtttga
gagattaaattctaacactgtttacaaagaaaagttggatccttttacat
aaaaatactcaaaataaaaattaattaaagataaataagttaggtcacta
aagtagaaaatggtatccaacaaagcaccacagaataaaaattacctatt
cgtagagtacattttttacttatgctaataaaataagccatgccaagaac
aagaaaaagcctgtggctgcagtaagtggtaagcctgaatcaggggttat
cacttgagccttgaagtatgaggccagattgaccttatctcaagcaacac
aatttaacaaaacaagcctgaaataatatttcaatagccttgaaggaaaa
tggctattgtatacaatctacttatgacaaaaaaagcataagtccagaaa
tacaatcacaggagatgctgccaggaattgggaagcattacttgatagct
aagcatttgctaaatagtaaaatcagagactgaaggtagttttcctcaaa
ctaggcttttcttcacaaaatttcactcccaccctaaatcagccaattat
cagaaacctagtcttaaaaaagacaaccctttatgtgttatattacctat
aaaatgtaaacgtgaaattcttctaaagttctaggagaaaattctattat
ttgatgcacctcacatactaacttagaattgacaataatttagaaccccc
ccgcgagccccagttcatttcagctcacagttccacatcacagagggagg
ccatcacagagggaggccagggcaggaacctggaggcaggaactgacata
cagcccatggaggagtgctacatcttgctcttcatgggtttgctcagcct
gcccatgtggtggcaccatacgcaataaacaagattctccactctgaatc
attaatcaacacatactccacagacttgtctacagacatcatatggagtg
cttctcattaagagtcctcttccccagatttgtttaggttaattcataca
aaaaaaaacaaaaacatacataatcaaacaaa
gaattctataaatatctttagaaaattttaagttcactttttagaagtct
tacatcgattattaagtaagatttaaataatttcccacattaactcaaat
tcacgatgtacctatatcataaataatattgttgagctgacatctagaac
ttactactgtctcattttcttgttatacttttctttatacaaaattaaac
gtttcataccattgaggaaagactataattctgtgggaagaaaaggattg
acaaggagacatgtaaaaataatagtcttcagtgttgcatgctgccagtg
tttcatgtattaatgcttaattcagtacctacttccactgaaaaccaact
tttcttttgccttatagaaatgaggctaacctagttgaccatattaaaac
tgaggtagatgtgactgttggcttattcagaaaatttctccctgtgaatt
cccacagtggtgatctgatttataaatcatctagataaaacttgatataa
aaatggactccttgtgccctccttgaagtaggttaagaaagacaacagat
aatatttaacatttatctgcacatgttggcaacagtagctaagtagctac
agcttgcatcctgtctataatatactttgtaccagtggtcactagcagag
agcctcacttactagctcctgagtggatgctgaagggtgatactgccttt
ccgctgccctagccgactaggagagtagcagctatctaccctcaacagaa
gggcagcatctgttcattagaccaagaagacaggatctatctagtgtgca
aggagtgtagtgtctagcaaaacagtgggcagcatctgccatccagatcg
ggcagacacaccccttcaaaagaaccaaatgtcagcatctgtcaccaact
ggaaggtagtttccatctactagaaacaggaaggcaacattttttcagag
cctacaacaaaagacataaagtgaatttatttgggtttgtgatttgtata
atagctatattatcaaaaatccatttatcataccatgagtataaatccta
caaaacaaagtcatgaacgatcaccacagaaacagattatgagtagttac

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_103680085_103681220
seq2: B6Ng01-002P07.b_48_1179

seq1  GAATTCAAAAGTATGTCTGCATTTCTGGATTCTTTATTCTGGATCAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGTATGTCTGCATTTCTGGATTCTTTATTCTGGATCAAGCT  50

seq1  TGAAGTTTGGGGGGCTGATTTTTAATGAAAACAGACTAGGAAAGGTTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTTGGGGGGCTGATTTTTAATGAAAACAGACTAGGAAAGGTTTGA  100

seq1  GAGATTAAATTCTAACACTGTTTACAAAGAAAAGTTGGATCCTTTTACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTAAATTCTAACACTGTTTACAAAGAAAAGTTGGATCCTTTTACAT  150

seq1  AAAAATACTCAAAATAAAAATTAATTAAAGATAAATAAGTTAGGTCACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATACTCAAAATAAAAATTAATTAAAGATAAATAAGTTAGGTCACTA  200

seq1  AAGTAGAAAATGGTATCCAACAAAGCACCACAGAATAAAAATTACCTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAAAATGGTATCCAACAAAGCACCACAGAATAAAAATTACCTATT  250

seq1  CGTAGAGTACATTTTTTACTTATGCTAATAAAATAAGCCATGCCAAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGAGTACATTTTTTACTTATGCTAATAAAATAAGCCATGCCAAGAAC  300

seq1  AAGAAAAAGCCTGTGGCTGCAGTAAGTGGTAAGCCTGAATCAGGGGTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAGCCTGTGGCTGCAGTAAGTGGTAAGCCTGAATCAGGGGTTAT  350

seq1  CACTTGAGCCTTGAAGTATGAGGCCAGATTGACCTTATCTCAAGCAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGAGCCTTGAAGTATGAGGCCAGATTGACCTTATCTCAAGCAACAC  400

seq1  AATTTAACAAAACAAGCCTGAAATAATATTTCAATAGCCTTGAAGGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAACAAAACAAGCCTGAAATAATATTTCAATAGCCTTGAAGGAAAA  450

seq1  TGGCTATTGTATACAATCTACTTATGACAAAAAAAGCATAAGTCCAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATTGTATACAATCTACTTATGACAAAAAAAGCATAAGTCCAGAAA  500

seq1  TACAATCACAGGAGATGCTGCCAGGAATTGGGAAGCATTACTTGATAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATCACAGGAGATGCTGCCAGGAATTGGGAAGCATTACTTGATAGCT  550

seq1  AAGCATTTGCTAAATAGTAAAATCAGAGACTGAAGGTAGTTTTCCTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTGCTAAATAGTAAAATCAGAGACTGAAGGTAGTTTTCCTCAAA  600

seq1  CTAGGCTTTTCTTCACAAAATTTCACTCCCACCCTAAATCAGCCAATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTTTTCTTCACAAAATTTCACTCCCACCCTAAATCAGCCAATTAT  650

seq1  CAGAAACCTAGTCTTAAAAAAGACAACCCTTTATGTGTTATATTACCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACCTAGTCTTAAAAAAGACAACCCTTTATGTGTTATATTACCTAT  700

seq1  AAAATGTAAACGTGAAATTCTTCTAAAGTTCTAGGAGAAAATTCTATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTAAACGTGAAATTCTTCTAAAGTTCTAGGAGAAAATTCTATTAT  750

seq1  TTGATGCACCTCACATACTAACTTAGAATTGACAATAATTTAGAA--CCT  798
      |||||||||||||||||||||||||||||||||||||||||||||  || 
seq2  TTGATGCACCTCACATACTAACTTAGAATTGACAATAATTTAGAACCCCC  800

seq1  TGGAGAGGAAAGGTTCATTTCAGCTCACAGTTCCACATCACAGAGGGAGG  848
        | |||     ||||||||||||||||||||||||||||||||||||||
seq2  CCGCGAGCCCCAGTTCATTTCAGCTCACAGTTCCACATCACAGAGGGAGG  850

seq1  CCATCACAGAGGGAGGCCAGGGCAGGAACCTGGAGGCAGGAACTGACATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACAGAGGGAGGCCAGGGCAGGAACCTGGAGGCAGGAACTGACATA  900

seq1  CAGCCCATGGAGGAGTGCTACATCTTGCTCTTCAT-GGTTTGCTCAGCCT  947
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAGCCCATGGAGGAGTGCTACATCTTGCTCTTCATGGGTTTGCTCAGCCT  950

seq1  GCCCAGGT-GTGGCACCATACGCAATAAACAAGATTCTTCCACTCTGAAT  996
      ||||| || |||||||||||||||||||||||||||| ||||||||||||
seq2  GCCCATGTGGTGGCACCATACGCAATAAACAAGATTC-TCCACTCTGAAT  999

seq1  CATTAATCAACACAATACTCCACAGACTTGTCTACAGGACAATCATATGG  1046
      ||||||||||||| |||||||||||||||||||||| ||| |||||||||
seq2  CATTAATCAACAC-ATACTCCACAGACTTGTCTACA-GAC-ATCATATGG  1046

seq1  AAGTGCTTCCTCAATTAAGAAGTCCTCTTCCCCAGATATGTATAGGTTTA  1096
       ||||||| ||| |||||| ||||||||||||||||| ||| |||||| |
seq2  -AGTGCTT-CTC-ATTAAG-AGTCCTCTTCCCCAGATTTGTTTAGGTTAA  1092

seq1  TATCAAATTAACAAAAA-AAAAAAAAACAAAAAAAAACAAA  1136
      | ||| |  || ||||| ||||| | ||| ||  |||||||
seq2  T-TCATACAAAAAAAAACAAAAACATACATAATCAAACAAA  1132

seq1: chr14_103755155_103756264
seq2: B6Ng01-002P07.g_68_1167 (reverse)

seq1  GTAACTACTCATAATCTGTTTCTGTGGTGATCTGTTCATGACTTTGTTTT  50
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTAACTACTCATAATCTGTTTCTGTGGTGATC-GTTCATGACTTTGTTTT  49

seq1  GTAAGGATTTATACCTTCATGGTATGGATAAATGGATTTTTTGATAATTA  100
      || |||||||||||  ||||||||| |||||||||| |||||||||| ||
seq2  GT-AGGATTTATAC--TCATGGTAT-GATAAATGGA-TTTTTGATAA-TA  93

seq1  TTAAGCTAATATACAAATCCACAAA-CCAAATAAATTCACTTTATGTCTT  149
      |  ||||| ||||||||| |||||| ||||||||||||||||||||||||
seq2  T--AGCTATTATACAAAT-CACAAACCCAAATAAATTCACTTTATGTCTT  140

seq1  TTGTTGTAGGCTCTGAAAAAATGTTGCCTTCCTGTTTCTAGTAGATGGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTAGGCTCTGAAAAAATGTTGCCTTCCTGTTTCTAGTAGATGGAA  190

seq1  ACTACCTTCCAGTTGGTGACAGATGCTGACATTTGGTTCTTTTGAAGGGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTTCCAGTTGGTGACAGATGCTGACATTTGGTTCTTTTGAAGGGG  240

seq1  TGTGTCTGCCCGATCTGGATGGCAGATGCTGCCCACCTGTTTTGCTAGAC  299
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGTGTCTGCCCGATCTGGATGGCAGATGCTGCCCA-CTGTTTTGCTAGAC  289

seq1  ACTACACTCCTTGCACACTAGATAGATCCTGTCTTCTTGGTCTAATGAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACTCCTTGCACACTAGATAGATCCTGTCTTCTTGGTCTAATGAAC  339

seq1  AGATGCTGCCCTTCTGTTGAGGGTAGATAGCTGCTACTCTCCTAGTCGGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGCCCTTCTGTTGAGGGTAGATAGCTGCTACTCTCCTAGTCGGC  389

seq1  TAGGGCAGCGGAAAGGCAGTATCACCCTTCAGCATCCACTCAGGAGCTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCAGCGGAAAGGCAGTATCACCCTTCAGCATCCACTCAGGAGCTAG  439

seq1  TAAGTGAGGCTCTCTGCTAGTGACCACTGGTACAAAGTATATTATAGACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAGGCTCTCTGCTAGTGACCACTGGTACAAAGTATATTATAGACA  489

seq1  GGATGCAAGCTGTAGCTACTTAGCTACTGTTGCCAACATGTGCAGATAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCAAGCTGTAGCTACTTAGCTACTGTTGCCAACATGTGCAGATAAA  539

seq1  TGTTAAATATTATCTGTTGTCTTTCTTAACCTACTTCAAGGAGGGCACAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAATATTATCTGTTGTCTTTCTTAACCTACTTCAAGGAGGGCACAA  589

seq1  GGAGTCCATTTTTATATCAAGTTTTATCTAGATGATTTATAAATCAGATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCCATTTTTATATCAAGTTTTATCTAGATGATTTATAAATCAGATC  639

seq1  ACCACTGTGGGAATTCACAGGGAGAAATTTTCTGAATAAGCCAACAGTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGTGGGAATTCACAGGGAGAAATTTTCTGAATAAGCCAACAGTCA  689

seq1  CATCTACCTCAGTTTTAATATGGTCAACTAGGTTAGCCTCATTTCTATAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACCTCAGTTTTAATATGGTCAACTAGGTTAGCCTCATTTCTATAA  739

seq1  GGCAAAAGAAAAGTTGGTTTTCAGTGGAAGTAGGTACTGAATTAAGCATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGAAAAGTTGGTTTTCAGTGGAAGTAGGTACTGAATTAAGCATT  789

seq1  AATACATGAAACACTGGCAGCATGCAACACTGAAGACTATTATTTTTACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATGAAACACTGGCAGCATGCAACACTGAAGACTATTATTTTTACA  839

seq1  TGTCTCCTTGTCAATCCTTTTCTTCCCACAGAATTATAGTCTTTCCTCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCTTGTCAATCCTTTTCTTCCCACAGAATTATAGTCTTTCCTCAA  889

seq1  TGGTATGAAACGTTTAATTTTGTATAAAGAAAAGTATAACAAGAAAATGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGAAACGTTTAATTTTGTATAAAGAAAAGTATAACAAGAAAATGA  939

seq1  GACAGTAGTAAGTTCTAGATGTCAGCTCAACAATATTATTTATGATATAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTAGTAAGTTCTAGATGTCAGCTCAACAATATTATTTATGATATAG  989

seq1  GTACATCGTGAATTTGAGTTAATGTGGGAAATTATTTAAATCTTACTTAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATCGTGAATTTGAGTTAATGTGGGAAATTATTTAAATCTTACTTAA  1039

seq1  TAATCGATGTAAGACTTCTAAAAAGTGAACTTAAAATTTTCTAAAGATAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCGATGTAAGACTTCTAAAAAGTGAACTTAAAATTTTCTAAAGATAT  1089

seq1  TTATAGAATTC  1110
      |||||||||||
seq2  TTATAGAATTC  1100