BAC Information

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BAC

Clone NameB6Ng01-003D09
Chromosome14 (Build37)
Map Location 96,415,692 - 96,416,533
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677613, LOC100043784, LOC382931, 4921530L21Rik
Downstream geneKlhl1, LOC100043366, LOC668654
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003D09.bB6Ng01-003D09.g
ACCDH840992DH840993
length8231,259
definitionDH840992|Mus musculus domesticus DNA, BAC clone: B6Ng01-003D09, 5' end.DH840993|Mus musculus domesticus DNA, BAC clone: B6Ng01-003D09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttcagatttttgacttctagatctgtaagtagaattgtcatc
actaagtcagttttaatttattagagtatcaataatggagtgattgacaa
tcagtatccctataatccctaatcagtttcaattgatgagcttttctttt
aagtttgagcctataagggacttttaaaaaaatgatataaaataagtcca
aacaacacaatagcaacaaaaattacagacaagcagcatagctgtgatga
aaatcagagaagttgaagttttcaacaatgcctatagcttctctgctact
gaaatacatttaatgatatagcacatttcataacacctgaatgttaaaaa
gaaaacttttactgtgcttacagagatagatataaaagaggatgccattc
ctgtttggaaaaaataagtaaatatatgaatttacaaagaaagtatgcta
ttagaggtacctgtctcataacttctgcactagttaaaacagatcaatag
atacatggaatttgtagtatttgctcaatgagttggtaatttgagatata
actatagagtgtacacagactctatggctcaaggaacaaaagtgctttct
actcagaagttaacgacctgagttcaacagacagatttcgcatggggaag
agacagtcaactataaaacatgttcactgacctgtagccattcactgtaa
catgtgtgtcccctgtaagcatcattaagatatttagtcctccaaatcct
gcccaccttcctcttcacccagtttcatgctctctttatctctcactaaa
atatatatgtcattgtgtgtgtg
gaattctttgcttagctctgtacctcattttttaatgagtttatttgaat
ttctggagtccagcttcttgagctctttgtatgtattggatattagcccc
ctatcagatttaggattggtaaaaatattttcccaatctgttggtggcct
ttttgtcttattgacagtgtcttttgccttacagaagctttgcaatttta
tgagatgccatttgtcaattcttgattttacagcgcaagccattgctgtt
ctgtttaggaatttttcccctgtgccaatatcttcaaggcactttctcct
ctattaatttcagtgtgtctggttttatgtggaagtcttagaaacacttg
aactttgtacaaggagataagaatggatttgcattcttctacatgctaac
tcccagctgtgcctgcaacatttgttgaaaatgctgtctttttttcactg
gatgattttagctcccttgtcaaagatcaagtgaccataggtgtgtggat
tcatttctgggtcatcaactctattccattgatctacctgtctgtcgctg
taccagtaacatgcagtttttatcacaattgctctgtaatacagcttaat
atcaggcatggtgattccaccagaggttctttttttgttgagaatagttt
tttctatcctaggttttttattattccagatgattatgcaaattgtcctt
tctatctcagtgaagaattgagttggaattttgatggggattgcagtgaa
tttgcagattgcttttggcagggtagccatttttagtatattaatcctac
caatccatgagcatgggagatctttccatcttcagagatcttaaaattct
ttcttcagagacttgaagttcttatcatacagatttttcacttccttagt
tagagtcacactaaggtattttatattatttttgactattgtgaaggtgt
tgtttccctaatttctttctcagtgtgtttatccttgtgtagagaaaggc
cattgatttgtttgaggtaatttaatatcctgctactgccactgaagctg
ttatcaggttaggagtcctctgggttgaattgggggtcacgggaataata
ccatcatatacatcttgcaacaggggattttggaccttctctctttacaa
attgcactcctggagtgtccttgggttcgaatggcttagctgaaactcag
gaccatttggaattcacttcaatttacagagctacgcataacgctgagcg
aaatattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_96415692_96416533
seq2: B6Ng01-003D09.b_46_868 (reverse)

seq1  CACACACACACACACACACACACACACACATGACATATATATTTTAGTGA  50
                        |||||||||| |||||||||||||||||||||
seq2  ------------------CACACACACA-ATGACATATATATTTTAGTGA  31

seq1  GAGATAAAGAGAGCATGAAACTGGGTGAAGAGGAAGGTGGGCAGGATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAAGAGAGCATGAAACTGGGTGAAGAGGAAGGTGGGCAGGATTTG  81

seq1  GAGGACTAAATATCTTAATGATGCTTACAGGGGACACACATGTTACAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTAAATATCTTAATGATGCTTACAGGGGACACACATGTTACAGTG  131

seq1  AATGGCTACAGGTCAGTGAACATGTTTTATAGTTGACTGTCTCTTCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTACAGGTCAGTGAACATGTTTTATAGTTGACTGTCTCTTCCCCA  181

seq1  TGCGAAATCTGTCTGTTGAACTCAGGTCGTTAACTTCTGAGTAGAAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAAATCTGTCTGTTGAACTCAGGTCGTTAACTTCTGAGTAGAAAGCA  231

seq1  CTTTTGTTCCTTGAGCCATAGAGTCTGTGTACACTCTATAGTTATATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTCCTTGAGCCATAGAGTCTGTGTACACTCTATAGTTATATCTC  281

seq1  AAATTACCAACTCATTGAGCAAATACTACAAATTCCATGTATCTATTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACCAACTCATTGAGCAAATACTACAAATTCCATGTATCTATTGAT  331

seq1  CTGTTTTAACTAGTGCAGAAGTTATGAGACAGGTACCTCTAATAGCATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTAACTAGTGCAGAAGTTATGAGACAGGTACCTCTAATAGCATAC  381

seq1  TTTCTTTGTAAATTCATATATTTACTTATTTTTTCCAAACAGGAATGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGTAAATTCATATATTTACTTATTTTTTCCAAACAGGAATGGCA  431

seq1  TCCTCTTTTATATCTATCTCTGTAAGCACAGTAAAAGTTTTCTTTTTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTTATATCTATCTCTGTAAGCACAGTAAAAGTTTTCTTTTTAAC  481

seq1  ATTCAGGTGTTATGAAATGTGCTATATCATTAAATGTATTTCAGTAGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGTGTTATGAAATGTGCTATATCATTAAATGTATTTCAGTAGCAG  531

seq1  AGAAGCTATAGGCATTGTTGAAAACTTCAACTTCTCTGATTTTCATCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTATAGGCATTGTTGAAAACTTCAACTTCTCTGATTTTCATCACA  581

seq1  GCTATGCTGCTTGTCTGTAATTTTTGTTGCTATTGTGTTGTTTGGACTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGCTGCTTGTCTGTAATTTTTGTTGCTATTGTGTTGTTTGGACTTA  631

seq1  TTTTATATCATTTTTTTAAAAGTCCCTTATAGGCTCAAACTTAAAAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATCATTTTTTTAAAAGTCCCTTATAGGCTCAAACTTAAAAGAAA  681

seq1  AGCTCATCAATTGAAACTGATTAGGGATTATAGGGATACTGATTGTCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATCAATTGAAACTGATTAGGGATTATAGGGATACTGATTGTCAAT  731

seq1  CACTCCATTATTGATACTCTAATAAATTAAAACTGACTTAGTGATGACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCATTATTGATACTCTAATAAATTAAAACTGACTTAGTGATGACAA  781

seq1  TTCTACTTACAGATCTAGAAGTCAAAAATCTGAAATGAATTC  842
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTTACAGATCTAGAAGTCAAAAATCTGAAATGAATTC  823