BAC Information

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BAC

Clone NameB6Ng01-003H07
Chromosome14 (Build37)
Map Location 30,687,834 - 30,909,680
singlet/doubletdoublet
Overlap geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d
Upstream geneCacna2d3, Lrtm1, Ppia-ps15
Downstream geneLOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1, Sfmbt1, Tmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003H07.bB6Ng01-003H07.g
ACCDH841160DH841161
length1,1261,133
definitionDH841160|Mus musculus domesticus DNA, BAC clone: B6Ng01-003H07, 5' end.DH841161|Mus musculus domesticus DNA, BAC clone: B6Ng01-003H07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,908,553 - 30,909,680)(30,687,834 - 30,688,985)
sequence
gaattcttcgagtctggcactttgaaattaattttagatattttaattta
attttacgtgtgtgagtgtttgctgccatgtacgtatgggcaccatgtgt
gagcctggtgcccacagaagtcagaagagggcttctggaactggagttat
gggtaacggtgagccatcgtgtaggcgccgggaaccgaacccaggttctc
tgtaagaacaagtgctcctaaccttcaagctgtctctctagccctaaagt
ctgacactttggtctaaacctgccccagcggcactaaatattgaaaagga
aaaccgaaattacattcctgactttaggggctcctggtgcggtagtgcgt
gatttcctagtttttgcaatattgccctgaattacagcaacttcttgctg
atcctgaccaagtcagattgcagagcagtgatgacagtgaacctttaaga
agttattgtctgatagatatgacactaggtcaggaagccaggaccaaggt
ctacaaccagattctgtccaggcttgaagaacttaagcaattcaaaccct
ccgtttctcagtagaagccaggcccatagtcaagcaacattttcagacac
tgttttacactttataatgaaaaggtctgtgtgctgatctgggggagagt
gtgaagcccagtaatactccctttaatgagacataaacctaaatagtata
agatttatcactactcaaactctacctttacccatcatatctgcagtgtg
ttagacaaggacctgagagatattcccaacagagaaagggtggcttccct
tatcctgaactgaaagaatgggcatttatttcctccatcatcggaacatc
ctcattgttgtcatgaaccaccaccaccccccacaacctccccatgttta
ggggaagttcaccatatgacttttgcagtgtactggcttgaatgttggca
gaagatgctgtacaagagggtggaaatgaccctggggtgcaatgtcaggg
gatctcccaatgcacagaatgagatcgtgaggttttgacatcagtactct
ctgctttcatccacagcactattgagcagaccaagaagttacggatgcat
ggacttctggaactggtcttcacagg
gaattctcccgaagctggagcaactggggagaactttccagaatcggtaa
gaagagcatttctttttttttttttttctcaacaccacagaggacctcat
ggaagctaggcaaatgttctgccactaaactatatttacaaactccttgt
gtacagatccaagaaccatctctgtgccagtctatgtcttccacctggtt
ggagatggagtctcctgtagtttgaagctgcatgtatcagactagctggc
cacaagcttccaagggttctcctgtggccccttcccacctcatacaggag
ctctaggatttacagaagggtactgagggcctgaactcagctcttcccgt
ttgcacagtaagctttacccattgggacatctcccagcctgccctttcta
ttttcaatacttcacatcattaaacaggcttgccagatctcctgagagac
atgaaggaagtaagtggggtagattagaggccagcgcctctctgagtccc
cgggtctgttgccttgtataaaatggctgagattttgcttctctccacat
ctgtgtcagtgtgatggagcatccacacccggcagaggggctgagtgtct
gtgtgtaaggaggtggcattaaaccagggctcagacctgcacctctgatg
gcactaatctgtgttatgttcagtttgagccagggccccaccaagttgca
caggtagcatttaactcactctgtagcccaggttgaccttgaacttgcaa
ttctacttcagctattccaagaatctgaaattatggtcttcattaacagg
cctggcaggtagtgaacatttctcttttaatattttattattgttaatta
tgtgcagtggggaggcaggtgcacatgagtgcagttgccctaaagccaga
aaaggctgtctagtggtcatgagctacccagcacggtgctaggaaccaaa
cttggtctctacaaacagtgcttgcttttggctggattgagctagagcca
actggtttacattgtgagtcaggcattcgaactaatgtggtgagacttgt
atcaaaacaaaaacgacagaacaaacaaggcatgtccagcttcgatagca
tcgtcattcctttaccagaaagggaactttccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_30908553_30909680
seq2: B6Ng01-003H07.b_44_1169 (reverse)

seq1  CCTGTGAAGACCATGTTCAGAATGTCCATGGCATCATTGAACATCTTGGA  50
      |||||||||||||  | ||||| |||||| |||||  | ||| |||||| 
seq2  CCTGTGAAGACCAGTTCCAGAA-GTCCAT-GCATCCGT-AACTTCTTGGT  47

seq1  CTGCTC-ATAGTGCTGTGGATGAAGGCAGAG-GTACTGATGTCAAAACCT  98
      |||||| ||||||||||||||||| |||||| ||||||||||||||||||
seq2  CTGCTCAATAGTGCTGTGGATGAAAGCAGAGAGTACTGATGTCAAAACCT  97

seq1  CACGATCTCA-TCTGTGCAATGGGAGATCCCCTGACATTTGCACCCCAGG  147
      |||||||||| |||||||| ||||||||||||||||| ||||||||||||
seq2  CACGATCTCATTCTGTGCATTGGGAGATCCCCTGACA-TTGCACCCCAGG  146

seq1  GTCATTTCCCACCCTCTTGTACAGCATCTTCTGCCAACATTCAAGCCAGT  197
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTT-CCACCCTCTTGTACAGCATCTTCTGCCAACATTCAAGCCAGT  195

seq1  ACACTGCAAAGGTCATATGGTGAACTTCCCCTAAACATGGGGAGGTTGTG  247
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCAAAAGTCATATGGTGAACTTCCCCTAAACATGGGGAGGTTGTG  245

seq1  GGGGGTGGTGGTGGTTCATGAC-ACAATGAGGATGTTCCGATGATGGAGG  296
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGGGGTGGTGGTGGTTCATGACAACAATGAGGATGTTCCGATGATGGAGG  295

seq1  AAATAAATGCCCATTCTTTCAGTTCAGGATAAGGGGAAGCCACCCTTTCT  346
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAATAAATGCCCATTCTTTCAGTTCAGGATAA-GGGAAGCCACCCTTTCT  344

seq1  CTGTTGGGAATATCTCTCAGGTCCTTGTCTAACACACTGCAGATATGATG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGGAATATCTCTCAGGTCCTTGTCTAACACACTGCAGATATGATG  394

seq1  GGTAAAGGTAGAGTTTGAGTAGTGATAAATCTTATACTATTTAGGTTTAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGGTAGAGTTTGAGTAGTGATAAATCTTATACTATTTAGGTTTAT  444

seq1  GTCTCATTAAAGGGAGTATTACTGGGCTTCACACTCTCCCCCAGATCAGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATTAAAGGGAGTATTACTGGGCTTCACACTCTCCCCCAGATCAGC  494

seq1  ACACAGACCTTTTCATTATAAAGTGTAAAACAGTGTCTGAAAATGTTGCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACCTTTTCATTATAAAGTGTAAAACAGTGTCTGAAAATGTTGCT  544

seq1  TGACTATGGGCCTGGCTTCTACTGAGAAACGGAGGGTTTGAATTGCTTAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATGGGCCTGGCTTCTACTGAGAAACGGAGGGTTTGAATTGCTTAA  594

seq1  GTTCTTCAAGCCTGGACAGAATCTGGTTGTAGACCTTGGTCCTGGCTTCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCAAGCCTGGACAGAATCTGGTTGTAGACCTTGGTCCTGGCTTCC  644

seq1  TGACCTAGTGTCATATCTATCAGACAATAACTTCTTAAAGGTTCACTGTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTAGTGTCATATCTATCAGACAATAACTTCTTAAAGGTTCACTGTC  694

seq1  ATCACTGCTCTGCAATCTGACTTGGTCAGGATCAGCAAGAAGTTGCTGTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGCTCTGCAATCTGACTTGGTCAGGATCAGCAAGAAGTTGCTGTA  744

seq1  ATTCAGGGCAATATTGCAAAAACTAGGAAATCACGCACTACCGCACCAGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGGCAATATTGCAAAAACTAGGAAATCACGCACTACCGCACCAGG  794

seq1  AGCCCCTAAAGTCAGGAATGTAATTTCGGTTTTCCTTTTCAATATTTAGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTAAAGTCAGGAATGTAATTTCGGTTTTCCTTTTCAATATTTAGT  844

seq1  GCCGCTGGGGCAGGTTTAGACCAAAGTGTCAGACTTTAGGGCTAGAGAGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCTGGGGCAGGTTTAGACCAAAGTGTCAGACTTTAGGGCTAGAGAGA  894

seq1  CAGCTTGAAGGTTAGGAGCACTTGTTCTTACAGAGAACCTGGGTTCGGTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGAAGGTTAGGAGCACTTGTTCTTACAGAGAACCTGGGTTCGGTT  944

seq1  CCCGGCGCCTACACGATGGCTCACCGTTACCCATAACTCCAGTTCCAGAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGCGCCTACACGATGGCTCACCGTTACCCATAACTCCAGTTCCAGAA  994

seq1  GCCCTCTTCTGACTTCTGTGGGCACCAGGCTCACACATGGTGCCCATACG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTTCTGACTTCTGTGGGCACCAGGCTCACACATGGTGCCCATACG  1044

seq1  TACATGGCAGCAAACACTCACACACGTAAAATTAAATTAAAATATCTAAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGCAGCAAACACTCACACACGTAAAATTAAATTAAAATATCTAAA  1094

seq1  ATTAATTTCAAAGTGCCAGACTCGAAGAATTC  1128
      ||||||||||||||||||||||||||||||||
seq2  ATTAATTTCAAAGTGCCAGACTCGAAGAATTC  1126

seq1: chr14_30687834_30688985
seq2: B6Ng01-003H07.g_67_1199

seq1  GAATTCTCCCGAAGCTGGAGCAACTGGGGAGAACTTTCCAGAATCGGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCGAAGCTGGAGCAACTGGGGAGAACTTTCCAGAATCGGTAA  50

seq1  GAAGAGCATTTCTTTTTTTTTTTTTTTCTCAACACCACAGAGGACCTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCATTTCTTTTTTTTTTTTTTTCTCAACACCACAGAGGACCTCAT  100

seq1  GGAAGCTAGGCAAATGTTCTGCCACTAAACTATATTTACAAACTCCTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTAGGCAAATGTTCTGCCACTAAACTATATTTACAAACTCCTTGT  150

seq1  GTACAGATCCAAGAACCATCTCTGTGCCAGTCTATGTCTTCCACCTGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGATCCAAGAACCATCTCTGTGCCAGTCTATGTCTTCCACCTGGTT  200

seq1  GGAGATGGAGTCTCCTGTAGTTTGAAGCTGCATGTATCAGACTAGCTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGGAGTCTCCTGTAGTTTGAAGCTGCATGTATCAGACTAGCTGGC  250

seq1  CACAAGCTTCCAAGGGTTCTCCTGTGGCCCCTTCCCACCTCATACAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCTTCCAAGGGTTCTCCTGTGGCCCCTTCCCACCTCATACAGGAG  300

seq1  CTCTAGGATTTACAGAAGGGTACTGAGGGCCTGAACTCAGCTCTTCCCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGATTTACAGAAGGGTACTGAGGGCCTGAACTCAGCTCTTCCCGT  350

seq1  TTGCACAGTAAGCTTTACCCATTGGGACATCTCCCAGCCTGCCCTTTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAGTAAGCTTTACCCATTGGGACATCTCCCAGCCTGCCCTTTCTA  400

seq1  TTTTCAATACTTCACATCATTAAACAGGCTTGCCAGATCTCCTGAGAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATACTTCACATCATTAAACAGGCTTGCCAGATCTCCTGAGAGAC  450

seq1  ATGAAGGAAGTAAGTGGGGTAGATTAGAGGCCAGCGCCTCTCTGAGTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGAAGTAAGTGGGGTAGATTAGAGGCCAGCGCCTCTCTGAGTCCC  500

seq1  CGGGTCTGTTGCCTTGTATAAAATGGCTGAGATTTTGCTTCTCTCCACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTCTGTTGCCTTGTATAAAATGGCTGAGATTTTGCTTCTCTCCACAT  550

seq1  CTGTGTCAGTGTGATGGAGCATCCACACCCGGCAGAGGGGCTGAGTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCAGTGTGATGGAGCATCCACACCCGGCAGAGGGGCTGAGTGTCT  600

seq1  GTGTGTAAGGAGGTGGCATTAAACCAGGGCTCAGACCTGCACCTCTGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTAAGGAGGTGGCATTAAACCAGGGCTCAGACCTGCACCTCTGATG  650

seq1  GCACTAATCTGTGTTATGTTCAGTTTGAGCCAGGGCCCCACCAAGTTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAATCTGTGTTATGTTCAGTTTGAGCCAGGGCCCCACCAAGTTGCA  700

seq1  CAGGTAGCATTTAACTCACTCTGTAGCCCAGGTTGACCTTGAACTTGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGCATTTAACTCACTCTGTAGCCCAGGTTGACCTTGAACTTGCAA  750

seq1  TTCTACTTCAGCTATTCCAAGAATCTGAAATTATGGTCTTCATTAACAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTTCAGCTATTCCAAGAATCTGAAATTATGGTCTTCATTAACAGG  800

seq1  CCTGGCAGGTAGTGAACATTTCTCTTTTAATATTTTATTATTGTTAATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCAGGTAGTGAACATTTCTCTTTTAATATTTTATTATTGTTAATTA  850

seq1  TGTGCAGTGGGGAGGCAGGTGCACATGAGTGCAGTTGCCCTAAAGCCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGTGGGGAGGCAGGTGCACATGAGTGCAGTTGCCCTAAAGCCAGA  900

seq1  AAAGGCTGTCTAGTGGTCATGAGCTACCCAGCACGGGTGCTAGGAACCAA  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAAGGCTGTCTAGTGGTCATGAGCTACCCAGCAC-GGTGCTAGGAACCAA  949

seq1  ACTTGGGTCCTCTACAAAACAGTGCTTGCTTTTGGCTGGATATGGAGCTA  1000
      ||||||   |||||| |||||||||||||||||||||||  || ||||||
seq2  ACTTGG--TCTCTAC-AAACAGTGCTTGCTTTTGGCTGG--ATTGAGCTA  994

seq1  GAGGCCAAACTGGTCTACATAGTGAGTTCAGGCCATCCGAAACTATGTGG  1050
      |||  | ||||||| ||||| ||||| ||||| ||| ||||   ||||||
seq2  GAG--CCAACTGGTTTACATTGTGAG-TCAGG-CATTCGAACTAATGTGG  1040

seq1  TGAGACCTGTATCAAAAAACAAAAACAGAACAAGAAACAAACAAAGCAGT  1100
      |||||| ||||||  |||||||||||   |||   ||||||||| |||  
seq2  TGAGACTTGTATC--AAAACAAAAAC--GACA--GAACAAACAAGGCATG  1084

seq1  GCCAGCTCCCGATAGCTACGTCATTTCTCTATACCAGAAAGGGGACTTTC  1150
       ||||||  |||||||  |||||||   || |||||||||||| ||||||
seq2  TCCAGCT-TCGATAGCATCGTCATT--CCTTTACCAGAAAGGGAACTTTC  1131

seq1  CC  1152
      ||
seq2  CC  1133