BAC Information

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BAC

Clone NameB6Ng01-003N14
Chromosome14 (Build37)
Map Location 8,995,189 - 8,996,375
singlet/doubletsinglet
Overlap genePxk
Upstream geneLOC100041791, LOC100042182, LOC100041808, LOC100042192, LOC100042207, EG432817, LOC100042217, LOC100041830, LOC100042235, EG545013, EG666947, LOC623215, LOC100042286, LOC666957, LOC100042263, LOC100042258, LOC100042272, LOC100041874, LOC100042304, LOC100041881, LOC100042312, LOC100041893, ENSMUSG00000058570, EG666976, Flnb, Dnase1l3, Abhd6, Rpp14
Downstream genePdhb, Kctd6, Acox2, BC055107, Oit1, LOC667005, 4930452B06Rik, LOC100041948
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003N14.bB6Ng01-003N14.g
ACCDH841433DH841434
length9931,160
definitionDH841433|Mus musculus domesticus DNA, BAC clone: B6Ng01-003N14, 5' end.DH841434|Mus musculus domesticus DNA, BAC clone: B6Ng01-003N14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcatattggttccctgaactgtaaagtgagggctattatggttg
gaaaggccaaatggaagcctttagagttgcctctgccaaagaaaatagtg
aatcaaaaacagtatcgtattcctggaggaattgcagaaattactgccac
tatcaaggacttgaaagatgcaggggtggtggttcccaccacatctccgt
ttaactctcctatctggccagtgcagaaaacagatggatcatggagaatg
acagttgattatcgaaaactaaatcaggtagtaactccaattgcagctgc
tgtaccagatgtagtttcgttacttgagcaaattaacacatctcctggca
cctggtatgcagctattgatctggcaaatgccttcttctcagtacctgtc
cataaggaccaccagaagcaatttgctttcagttggcaaggccaacagta
taccttcacagttttgcctcaaggatatattaactctcctgccctgtgtc
ataatttagttagaagggatcttgatcgtttggatcttccacaaaatatc
acattggtgcactatattgatgacattatgctgattggaccaagtgagca
ggaagtagcaaccactttggactcattggtaacacatatgcgtatcagag
gatgggaaataaatccaaccaaaattcaaggaccatctactcagtgaaat
tcttaggagtccagtggtgtggagcatgcagagatattccttctaaggtg
aaagataagttattgcacctggcccctcctacaaccaagaaagaagcaca
acgtttagtgggtctatttggattctggagactacacatcctcacttggg
tgtgttacttaggctaatttaccaagtgacttcgaaagctgctagctttg
gtggggctggaacaggagaaggcccttcaacaggtccagctgctggcagc
tgctctaccacttgactattgaccagcagacccgatggtactg
gaattctctggggacgaaatgttctcagggttcttcaaacactgattaaa
aaataaatacataaataaaaataataactggaagcaacaaaggtggtggc
aaagggtgggggatttaatggttatttcctttaaatgagtcatgtgagaa
ttgaatcaagtatgtgaaaccacacagggacatctctccctagagtagct
ctgactccatttccagctgtatggcttaggttgcggttggctctgcctac
tgagctcacaggtggaacatatgcatgcagaattaggccaaggggacaaa
caatccctgtttcctcacatactatttgaaggaagtgatgggctcaaagc
cccaggcatcctcataccctgcctacccagctttggtcttacaggcacgt
gctactgctcaggtcctcacgctcgcacggcgagcatttcatagagaagc
agtttctcagcgccacacaactgcatcttcacttgaaaagcaggtacttg
cataagtgagaaagagatttgaggttgactataaggaggtaagccatgat
atgggaagtagcagagactgagtagcatctgttgacctgtcacagaatag
taagccactcagaatcctcccccaccgccaacaagacagggtttctctgt
gtagccctggctgtcctggaactcactctgtagaccaggctggcctcgaa
ctcagaaatccacctgcctctgccttccaaatgctgggattaaaagcgta
cgccaccaccacccggcgccactcagcattcttaacagggagccagagtg
ttaactcaattccctcagagtctgttgtgaataattccctgtggggctgc
attaaaaatataaagtgctaatacccaccaggaagaatgtagagaaaagg
gctcttcctggcaatcccattttcgggggaagtagtctttcaggcactat
tcctttttaccatagcctacttaacagatgagtcacatcagtgtgtgccc
atctgtggaacatcagatcctggacaaggaaactgggtatctcagacatc
ctcagcttcaggacatgtctcctgcaacaagttaattttatggttgtcaa
gggtagacctgcacttaattgcctgaacccagcaatccttattagcacaa
ttgctttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_8995189_8996375
seq2: B6Ng01-003N14.g_69_1228 (reverse)

seq1  AAGAAAGGCAAAT-TGCTAAATAAAGGGGATTGCTAGAGGTCTCAGCAAA  49
      |||||| |||| | |||| |||||   ||||||||   ||  ||||  ||
seq2  AAGAAA-GCAATTGTGCT-AATAA---GGATTGCT---GGGTTCAGGCAA  42

seq1  TAAAGGTGCAGGCTCCTAACCCTTGACAACATTTAAAATTTTACTATGTT  99
      | || ||||||| ||   ||||||||||||  |  ||| || ||| ||||
seq2  TTAA-GTGCAGG-TC--TACCCTTGACAACCAT--AAAATTAACT-TGTT  85

seq1  GCAAGGAGACATGTTCCTGGAAGCTGAGGATGTCTGAGATACCCAGTTTC  149
      || |||||||||| |||| |||||||||||||||||||||||||||||||
seq2  GC-AGGAGACATG-TCCT-GAAGCTGAGGATGTCTGAGATACCCAGTTTC  132

seq1  CCTTTGTCCAGGATCCCTGATGTTCCACAAGATGGGCACACACTTGATGT  199
      |  |||||||||||  |||||||||||| |||||||||||||| ||||||
seq2  C--TTGTCCAGGAT--CTGATGTTCCAC-AGATGGGCACACAC-TGATGT  176

seq1  GACTCATTCTGTTAAGTTAGGCTATGGTAAAAAGGAATAGTGCCTGAAAG  249
      |||||| ||||||||| |||||||||||||||||||||||||||||||||
seq2  GACTCA-TCTGTTAAG-TAGGCTATGGTAAAAAGGAATAGTGCCTGAAAG  224

seq1  ACTACTTCCCCCCGAAAATGGGATTGCCAGGAAGAGCCCTTTTCTCTACA  299
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTT-CCCCCGAAAATGGGATTGCCAGGAAGAGCCCTTTTCTCTACA  273

seq1  TTCTTCCTGGTGGGTATTAGCACTTTATATTTTTTAATGCAGCCCCACAG  349
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTCTTCCTGGTGGGTATTAGCACTTTATA-TTTTTAATGCAGCCCCACAG  322

seq1  GGAATTATTCACAACAGACTCTGAGGGAATTGAGTTAACACTCTGGCTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTATTCACAACAGACTCTGAGGGAATTGAGTTAACACTCTGGCTCC  372

seq1  CTGTTAAGAATGCTGAGTGGCGCCGGGTGGTGGTGGCGTACGCTTTTAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAAGAATGCTGAGTGGCGCCGGGTGGTGGTGGCGTACGCTTTTAAT  422

seq1  CCCAGCATTTGGAAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCATTTGGAAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGC  472

seq1  CTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCC  522

seq1  TGTCTTGTTGGCGGTGGGGGAGGATTCTGAGTGGCTTACTATTCTGTGAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGTTGGCGGTGGGGGAGGATTCTGAGTGGCTTACTATTCTGTGAC  572

seq1  AGGTCAACAGATGCTACTCAGTCTCTGCTACTTCCCATATCATGGCTTAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAACAGATGCTACTCAGTCTCTGCTACTTCCCATATCATGGCTTAC  622

seq1  CTCCTTATAGTCAACCTCAAATCTCTTTCTCACTTATGCAAGTACCTGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTATAGTCAACCTCAAATCTCTTTCTCACTTATGCAAGTACCTGCT  672

seq1  TTTCAAGTGAAGATGCAGTTGTGTGGCGCTGAGAAACTGCTTCTCTATGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGTGAAGATGCAGTTGTGTGGCGCTGAGAAACTGCTTCTCTATGA  722

seq1  AATGCTCGCCGTGCGAGCGTGAGGACCTGAGCAGTAGCACGTGCCTGTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCGCCGTGCGAGCGTGAGGACCTGAGCAGTAGCACGTGCCTGTAA  772

seq1  GACCAAAGCTGGGTAGGCAGGGTATGAGGATGCCTGGGGCTTTGAGCCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAAGCTGGGTAGGCAGGGTATGAGGATGCCTGGGGCTTTGAGCCCA  822

seq1  TCACTTCCTTCAAATAGTATGTGAGGAAACAGGGATTGTTTGTCCCCTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCCTTCAAATAGTATGTGAGGAAACAGGGATTGTTTGTCCCCTTG  872

seq1  GCCTAATTCTGCATGCATATGTTCCACCTGTGAGCTCAGTAGGCAGAGCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAATTCTGCATGCATATGTTCCACCTGTGAGCTCAGTAGGCAGAGCC  922

seq1  AACCGCAACCTAAGCCATACAGCTGGAAATGGAGTCAGAGCTACTCTAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGCAACCTAAGCCATACAGCTGGAAATGGAGTCAGAGCTACTCTAGG  972

seq1  GAGAGATGTCCCTGTGTGGTTTCACATACTTGATTCAATTCTCACATGAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGTCCCTGTGTGGTTTCACATACTTGATTCAATTCTCACATGAC  1022

seq1  TCATTTAAAGGAAATAACCATTAAATCCCCCACCCTTTGCCACCACCTTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAAAGGAAATAACCATTAAATCCCCCACCCTTTGCCACCACCTTT  1072

seq1  GTTGCTTCCAGTTATTATTTTTATTTATGTATTTATTTTTTAATCAGTGT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTCCAGTTATTATTTTTATTTATGTATTTATTTTTTAATCAGTGT  1122

seq1  TTGAAGAACCCTGAGAACATTTCGTCCCCAGAGAATTC  1187
      ||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAACCCTGAGAACATTTCGTCCCCAGAGAATTC  1160