BAC Information

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BAC

Clone NameB6Ng01-004A13
Chromosome14 (Build37)
Map Location 21,276,409 - 21,408,693
singlet/doubletdoublet
Overlap geneAnxa7, Zmynd17, Ppp3cb, Usp54
Upstream gene1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18
Downstream geneMyoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1, Adk, Myst4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004A13.bB6Ng01-004A13.g
ACCDH841556DH841557
length1,1401,042
definitionDH841556|Mus musculus domesticus DNA, BAC clone: B6Ng01-004A13, 5' end.DH841557|Mus musculus domesticus DNA, BAC clone: B6Ng01-004A13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,276,409 - 21,277,561)(21,407,648 - 21,408,693)
sequence
gaattctgtaaagcctagactgagtgaaggaactctatgagtccatctac
ccggggaacccagtgttatcaactcaggacagaagggaggagaagaggga
agagggtggctgtttcatgactatttcatgagtataaattttcagtttta
caagatgtaaaaagttctagatgatgtgacaatgtacaacaatgtgactg
tatttaccaccacagtacacttaaaaatggtttgaatagtaaattttatt
atgtatattttattgcacagagaaaccctgtctctaaacaaacaaacaaa
aaaatagaatagattctgcttagagaatttaggtgtaagaataaacacac
atcaaggatttaaatatacccaaattttaagctggttgtggtaatgcatg
cctttaatctcagcactcaagaagcaagaagacctttatatgtttgtggt
cagcctagtctacatattgagttctatggctatgtaaagaaaccccatct
caaaaaaaaaaacaaaaaaacacaaaaccaccaaattttgtttgtcccca
gcaaacaaatctacctcctctagtattatgtaataatgtttgctttcagt
taaaaatattaagctggacatggtggcacacgcctttaatcccagcacta
gggaagcagaggcaggcggatctctgttaattctaggccagcctggtcta
taaagtgagttccaggacagccaaggctacataaaaagtgctgtcttggg
gaaaaaaaaaacacaatacagcaacaacaacaacaacaacaacaacatct
cctagaaacccaaacccaaaaacaaaccaaaaaagtaaaagtagaaactg
atgaatttaaggttattttgtaattaataaggatgctaacttttgatatc
caaatggatttttctaagctcggaactgaagcttagctcattgaccgagt
actgcttagcatgtcaagtactttggtttgatttccagcaccacaaaaaa
aaaaaaaaaatatcacaaaaagctaagcagacctacaccccttttctgta
gccctagctactatgcagcagcagagattacttgagcccaatattgggca
tgtctagtcactgttaatggagacctagtctctctaaaaa
gaattcacttccatattgctgatgaaaccaaagaggatatatgtactgct
caacactgcatatcccaccagaaatttgcaatgacattgtttgagcaggt
aaatctataccttggactttttctttaagaatattttatctgaggatgta
aagtttcaaaacagttcatgactggctgcttagtgtccctttccctctgg
cccagtgtgtgtgcagcagctgtggcgccacgtccgacccgctgcccttt
atccagatggtgcactacatctccaccactgccctctggtgagttctagg
caggtttttttttttttttcctttaaggcttaaatatttttattttatat
gtatgaatgttttatctgtatgtatgtttgaacactatgcttatgcctgg
tgcctgcagtgatcagggagagtgttggaggatcccctggaactggggtt
atagatagccatgagcttacatgtggtgctaggaactgaacctgggtcct
ctgcaagaacagctagtacttttacttgttacttgaaccatttttccaga
tcattcttacagaatttgtcctgttaggcattcctccagttgaatgggtt
ttaactgaaggctaccaaatagcatatatctttattgctgaatttgtgtt
gtaaacttcagaatttgtaggcttatttgtggatagcaaaatacaaagag
aaatggggattctgtgggttttgaatttgggaactgtgtttgtagggcac
tgagactagtcaggacagagtaaatgaaaaaatcacacatacccacacct
ttaatcccagtcctttggaggcagaggcggtgtatctctgtgtgttggag
gccagaactgagactggtctacatagcaagttccaagacagccagagagg
agctacacaatgaggccctgtcttaaagaaagaagtgaagtaaggggttt
gtatgatgattttatttttaagttgagcataatttgggataacacctact
accattaccttcctcctttcccatctgaagtaccaggctatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_21276409_21277561
seq2: B6Ng01-004A13.b_46_1185

seq1  GAATTCTGTAAAGCCTAGACTGAGTGAAGGAACTCTATGAGTCCATCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAAAGCCTAGACTGAGTGAAGGAACTCTATGAGTCCATCTAC  50

seq1  CCGGGGAACCCAGTGTTATCAACTCAGGACAGAAGGGAGGAGAAGAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGGAACCCAGTGTTATCAACTCAGGACAGAAGGGAGGAGAAGAGGGA  100

seq1  AGAGGGTGGCTGTTTCATGACTATTTCATGAGTATAAATTTTCAGTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTGGCTGTTTCATGACTATTTCATGAGTATAAATTTTCAGTTTTA  150

seq1  CAAGATGTAAAAAGTTCTAGATGATGTGACAATGTACAACAATGTGACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGTAAAAAGTTCTAGATGATGTGACAATGTACAACAATGTGACTG  200

seq1  TATTTACCACCACAGTACACTTAAAAATGGTTTGAATAGTAAATTTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACCACCACAGTACACTTAAAAATGGTTTGAATAGTAAATTTTATT  250

seq1  ATGTATATTTTATTGCACAGAGAAACCCTGTCTCTAAACAAACAAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATTTTATTGCACAGAGAAACCCTGTCTCTAAACAAACAAACAAA  300

seq1  AAAATAGAATAGATTCTGCTTAGAGAATTTAGGTGTAAGAATAAACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGAATAGATTCTGCTTAGAGAATTTAGGTGTAAGAATAAACACAC  350

seq1  ATCAAGGATTTAAATATACCCAAATTTTAAGCTGGTTGTGGTAATGCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGATTTAAATATACCCAAATTTTAAGCTGGTTGTGGTAATGCATG  400

seq1  CCTTTAATCTCAGCACTCAAGAAGCAAGAAGACCTTTATATGTTTGTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATCTCAGCACTCAAGAAGCAAGAAGACCTTTATATGTTTGTGGT  450

seq1  CAGCCTAGTCTACATATTGAGTTCTATGGCTATGTAAAGAAACCCCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTAGTCTACATATTGAGTTCTATGGCTATGTAAAGAAACCCCATCT  500

seq1  CAAAAAAAAAAACAAAAAAACACAAAACCACCAAATTTTGTTTGTCCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAAACAAAAAAACACAAAACCACCAAATTTTGTTTGTCCCCA  550

seq1  GCAAACAAATCTACCTCCTCTAGTATTATGTAATAATGTTTGCTTTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAAATCTACCTCCTCTAGTATTATGTAATAATGTTTGCTTTCAGT  600

seq1  TAAAAATATTAAGCTGGACATGGTGGCACACGCCTTTAATCCCAGCACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATATTAAGCTGGACATGGTGGCACACGCCTTTAATCCCAGCACTA  650

seq1  GGGAAGCAGAGGCAGGCGGATCTCTGTTAATTCTAGGCCAGCCTGGTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCAGAGGCAGGCGGATCTCTGTTAATTCTAGGCCAGCCTGGTCTA  700

seq1  TAAAGTGAGTTCCAGGACAGCCAAGGCTACATAAAAAGTGCTGTCTTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGAGTTCCAGGACAGCCAAGGCTACATAAAAAGTGCTGTCTTGGG  750

seq1  GAAAAAAAAAACACAATACAGCAACAACAACAACAACAACAACAACATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAACACAATACAGCAACAACAACAACAACAACAACAACATCT  800

seq1  CCTAGAAACCCAAACCCAAAAACAAACCAAAAAAGTAAAAGTAGAAACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAACCCAAACCCAAAAACAAACCAAAAAAGTAAAAGTAGAAACTG  850

seq1  ATGAATTTAAAGGTTATTTTGTAATTAATAAGGATGCTAAC-TTTGATAT  899
      |||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  ATGAATTT-AAGGTTATTTTGTAATTAATAAGGATGCTAACTTTTGATAT  899

seq1  CCAAATGGATTTTTCTAAGCTCGGAACTGAAGCTTAGCTCATTGACCGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGGATTTTTCTAAGCTCGGAACTGAAGCTTAGCTCATTGACCGAG  949

seq1  TAACTGCTTAGCATGTACAAGTACCTTGGTTTGATTTCCAGCACCAC-AA  998
      | |||||||||||||| ||||||| |||||||||||||||||||||| ||
seq2  T-ACTGCTTAGCATGT-CAAGTACTTTGGTTTGATTTCCAGCACCACAAA  997

seq1  AAAAAAAAAAAAATATCAACAAAAAAGCAAAGCAGACACAACAACGCATG  1048
      ||||||||||||||||||   ||||||| |||||||| | ||| | | | 
seq2  AAAAAAAAAAAAATATCA--CAAAAAGCTAAGCAGAC-CTACACCCCTTT  1044

seq1  TCTGTAGCCCTAGCTACTATGCAGCCAAGGCAAGAGATCACTGAAGCCCA  1098
      |||||||||||||||||||||||||  ||   |||||| |||  ||||| 
seq2  TCTGTAGCCCTAGCTACTATGCAGC--AG--CAGAGATTACTTGAGCCC-  1089

seq1  AATATTTGGGGCCAGTCTAGTCACTGTTAAT-GAGACCTCAGTCTCTTTT  1147
      ||||||  ||||  ||||||||||||||||| ||||||| ||||||  | 
seq2  AATATT--GGGCATGTCTAGTCACTGTTAATGGAGACCT-AGTCTC--TC  1134

seq1  TAAAAA  1153
      ||||||
seq2  TAAAAA  1140

seq1: chr14_21407648_21408693
seq2: B6Ng01-004A13.g_68_1109 (reverse)

seq1  AATAGCCTGGTTACTTCAAGATGGGGAAAGGAGGAAGGTAATGGTAGTAG  50
      |||||||||| |||||| |||| |||||||||||||||||||||||||||
seq2  AATAGCCTGG-TACTTC-AGAT-GGGAAAGGAGGAAGGTAATGGTAGTAG  47

seq1  GTGTTATTCCAAATTATGGCTCAACTAAAAAATAAAATCATTCATACAAA  100
      ||||||| ||||||||| |||||||| ||||||||||||| |||||||||
seq2  GTGTTATCCCAAATTAT-GCTCAACTTAAAAATAAAATCA-TCATACAAA  95

seq1  CCCCTAAC-TCACTTCTTTCTTTAAGACAGGGCCTCATTGTGTAGCT-CT  148
      ||||| || |||||||||||||||||||||||||||||||||||||| ||
seq2  CCCCTTACTTCACTTCTTTCTTTAAGACAGGGCCTCATTGTGTAGCTCCT  145

seq1  CTCTGGCTGTCTTGGAACTTGCTATGTAGACCAGTCTCAG-TCTGGCCTC  197
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTCTGGCTGTCTTGGAACTTGCTATGTAGACCAGTCTCAGTTCTGGCCTC  195

seq1  CAACACACAGAGATACACCAGCCTCTGCCTCCAAAGGACTGGGATTAAAG  247
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAACACACAGAGATACACC-GCCTCTGCCTCCAAAGGACTGGGATTAAAG  244

seq1  GTGTGGGTATGTGTGATTTTTTTCATTTACTCTGTCCTGACTAGTCTCAG  297
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTGTGGGTATGTGTGA-TTTTTTCATTTACTCTGTCCTGACTAGTCTCAG  293

seq1  TGCCCTACAAACACAGTTCCCAAATTCAAAACCCACAGAATCCCCATTTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTACAAACACAGTTCCCAAATTCAAAACCCACAGAATCCCCATTTC  343

seq1  TCTTTGTATTTTGCTATCCACAAATAAGCCTACAAATTCTGAAGTTTACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTATTTTGCTATCCACAAATAAGCCTACAAATTCTGAAGTTTACA  393

seq1  ACACAAATTCAGCAATAAAGATATATGCTATTTGGTAGCCTTCAGTTAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATTCAGCAATAAAGATATATGCTATTTGGTAGCCTTCAGTTAAA  443

seq1  ACCCATTCAACTGGAGGAATGCCTAACAGGACAAATTCTGTAAGAATGAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTCAACTGGAGGAATGCCTAACAGGACAAATTCTGTAAGAATGAT  493

seq1  CTGGAAAAATGGTTCAAGTAACAAGTAAAAGTACTAGCTGTTCTTGCAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAAATGGTTCAAGTAACAAGTAAAAGTACTAGCTGTTCTTGCAGA  543

seq1  GGACCCAGGTTCAGTTCCTAGCACCACATGTAAGCTCATGGCTATCTATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCAGGTTCAGTTCCTAGCACCACATGTAAGCTCATGGCTATCTATA  593

seq1  ACCCCAGTTCCAGGGGATCCTCCAACACTCTCCCTGATCACTGCAGGCAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGTTCCAGGGGATCCTCCAACACTCTCCCTGATCACTGCAGGCAC  643

seq1  CAGGCATAAGCATAGTGTTCAAACATACATACAGATAAAACATTCATACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATAAGCATAGTGTTCAAACATACATACAGATAAAACATTCATACA  693

seq1  TATAAAATAAAAATATTTAAGCCTTAAAGGAAAAAAAAAAAAAAACCTGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATAAAAATATTTAAGCCTTAAAGGAAAAAAAAAAAAAAACCTGC  743

seq1  CTAGAACTCACCAGAGGGCAGTGGTGGAGATGTAGTGCACCATCTGGATA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACTCACCAGAGGGCAGTGGTGGAGATGTAGTGCACCATCTGGATA  793

seq1  AAGGGCAGCGGGTCGGACGTGGCGCCACAGCTGCTGCACACACACTGGGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCAGCGGGTCGGACGTGGCGCCACAGCTGCTGCACACACACTGGGC  843

seq1  CAGAGGGAAAGGGACACTAAGCAGCCAGTCATGAACTGTTTTGAAACTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGAAAGGGACACTAAGCAGCCAGTCATGAACTGTTTTGAAACTTT  893

seq1  ACATCCTCAGATAAAATATTCTTAAAGAAAAAGTCCAAGGTATAGATTTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTCAGATAAAATATTCTTAAAGAAAAAGTCCAAGGTATAGATTTA  943

seq1  CCTGCTCAAACAATGTCATTGCAAATTTCTGGTGGGATATGCAGTGTTGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCAAACAATGTCATTGCAAATTTCTGGTGGGATATGCAGTGTTGA  993

seq1  GCAGTACATATATCCTCTTTGGTTTCATCAGCAATATGGAAGTGAATTC  1046
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTACATATATCCTCTTTGGTTTCATCAGCAATATGGAAGTGAATTC  1042