BAC Information

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BAC

Clone NameB6Ng01-004J17
Chromosome14 (Build37)
Map Location 49,528,192 - 49,684,633
singlet/doubletdoublet
Overlap geneExoc5
Upstream gene4930447J18Rik, Map1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972
Downstream gene4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4, 3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004J17.bB6Ng01-004J17.g
ACCDH841968DH841969
length1421,054
definitionDH841968|Mus musculus domesticus DNA, BAC clone: B6Ng01-004J17, 5' end.DH841969|Mus musculus domesticus DNA, BAC clone: B6Ng01-004J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,684,492 - 49,684,633)(49,528,192 - 49,529,243)
sequence
gaattctctttaacatccacaatttcctcttggatggaaaattatatttt
cttctttagacgtataccaagatgtcttcagtaacttattcgaaaatgtg
ttttctttctcagggatgaagaaagtgggggtggggggaagg
gaattcatttcctattttctctgcgaaagggcaccgacatgcatgtctac
accacacttagggtctctccaggcacaaactggagtagcagaaggaggct
ctagagttcccaccctttgaccccacatttcttccttgttagaatcactt
tgcatcaatggccttagatttttttctctatccatgttaatagagcaagg
tatccaggatgccctggggttggggaacacaacagcacccctaatctgta
acattccgtcgactagcaggaagaatactgttacactcgccatggcatct
gtctgggaaggagactgcaagaataggggttgttttttgagcttttagag
aagttctcagaaccctaagatcccgtagaacaaattataacaactatggc
catccacagagggtggttcaaacaggacacccaagccccacttgtttcag
ggtgcctgtctgggttggcccaggtatatgagcttgagcttagtgccatt
ccagtgacactgtacacgggacactggtgagataccactcgtttcttctg
ccctgcagggggattgctaagagtaaaaaggaagtgggaaattgtttgct
tatattaccctcagatgctccatgggggaaatggatccccgaggattcta
cggttgcatcccctgaggcttggaggcttgtggagaaaaaaaaaatggtt
agacagtttttttttttccattctgcttcctgacaatcacagtcctatgg
ctccctataagcctctagagacagtgtgtaggactaaaccagttcaccgc
tctagaggaggaggtagcagatacagagggaaaccatagatgagtagaca
agacccctatccttgtcatgcatgcacagttgaacactaagtccaaatgt
gttcccaggggagaggctgaacctcaaaagggtggcatggtgaagactac
ttctcagaagtaaaagcgtcagggtcagcatcactgttatgccaggcatg
acgaacgtccagcggggagcgtctggactggtggagggaggtatttattg
acag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_49684492_49684633
seq2: B6Ng01-004J17.b_41_182 (reverse)

seq1  CCTTCCCCCCACCCCCACTTTCTTCATCCCTGAGAAAGAAAACACATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCCCACCCCCACTTTCTTCATCCCTGAGAAAGAAAACACATTTT  50

seq1  CGAATAAGTTACTGAAGACATCTTGGTATACGTCTAAAGAAGAAAATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATAAGTTACTGAAGACATCTTGGTATACGTCTAAAGAAGAAAATATA  100

seq1  ATTTTCCATCCAAGAGGAAATTGTGGATGTTAAAGAGAATTC  142
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCATCCAAGAGGAAATTGTGGATGTTAAAGAGAATTC  142

seq1: chr14_49528192_49529243
seq2: B6Ng01-004J17.g_67_1120

seq1  GAATTCATTTCCTATTTTCTCTGCGAAAGGGCACCGACATGCATGTCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCCTATTTTCTCTGCGAAAGGGCACCGACATGCATGTCTAC  50

seq1  ACCACACTTAGGGTCTCTCCAGGCACAAACTGGAGTAGCAGAAGGAGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACTTAGGGTCTCTCCAGGCACAAACTGGAGTAGCAGAAGGAGGCT  100

seq1  CTAGAGTTCCCACCCTTTGACCCCACATTTCTTCCTTGTTAGAATCACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTTCCCACCCTTTGACCCCACATTTCTTCCTTGTTAGAATCACTT  150

seq1  TGCATCAATGGCCTTAGATTTTTTTCTCTATCCATGTTAATAGAGCAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCAATGGCCTTAGATTTTTTTCTCTATCCATGTTAATAGAGCAAGG  200

seq1  TATCCAGGATGCCCTGGGGTTGGGGAACACAACAGCACCCCTAATCTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGGATGCCCTGGGGTTGGGGAACACAACAGCACCCCTAATCTGTA  250

seq1  ACATTCCGTCGACTAGCAGGAAGAATACTGTTACACTCGCCATGGCATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCGTCGACTAGCAGGAAGAATACTGTTACACTCGCCATGGCATCT  300

seq1  GTCTGGGAAGGAGACTGCAAGAATAGGGGTTGTTTTTTGAGCTTTTAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGAAGGAGACTGCAAGAATAGGGGTTGTTTTTTGAGCTTTTAGAG  350

seq1  AAGTTCTCAGAACCCTAAGATCCCGTAGAACAAATTATAACAACTATGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTCAGAACCCTAAGATCCCGTAGAACAAATTATAACAACTATGGC  400

seq1  CATCCACAGAGGGTGGTTCAAACAGGACACCCAAGCCCCACTTGTTTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCACAGAGGGTGGTTCAAACAGGACACCCAAGCCCCACTTGTTTCAG  450

seq1  GGTGCCTGTCTGGGTTGGCCCAGGTATATGAGCTTGAGCTTAGTGCCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCTGTCTGGGTTGGCCCAGGTATATGAGCTTGAGCTTAGTGCCATT  500

seq1  CCAGTGACACTGTACACGGGACACTGGTGAGATACCACTCGTTTCTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGACACTGTACACGGGACACTGGTGAGATACCACTCGTTTCTTCTG  550

seq1  CCCTGCAGGGGGATTGCTAAGAGTAAAAAGGAAGTGGGAAATTGTTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCAGGGGGATTGCTAAGAGTAAAAAGGAAGTGGGAAATTGTTTGCT  600

seq1  TATATTACCCTCAGATGCTCCATGGGGGAAATGGATCCCCGAGGATTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTACCCTCAGATGCTCCATGGGGGAAATGGATCCCCGAGGATTCTA  650

seq1  CGGTTGCATCCCCTGAGGCTTGGAGGCTTGTGGAG-AAAAAAAAATGGTT  699
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CGGTTGCATCCCCTGAGGCTTGGAGGCTTGTGGAGAAAAAAAAAATGGTT  700

seq1  AGACAG-TTTTTTTTTTCCATTCTGCTTCCTGACAATCACAGTCCTATGG  748
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTTTTTTTTTTTCCATTCTGCTTCCTGACAATCACAGTCCTATGG  750

seq1  CTCCCTATAAGCCTCTAGAGACAGTGTGTAGGACTAAACCAGTTCACCGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTATAAGCCTCTAGAGACAGTGTGTAGGACTAAACCAGTTCACCGC  800

seq1  TCTAGAGGAGGAGGTAGCAGATACAGAGGGAAACCATAGATGAGTAGACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAGGAGGAGGTAGCAGATACAGAGGGAAACCATAGATGAGTAGACA  850

seq1  AGACCCCTATCCTTGTCATGCATGCACAGTTGAACACTAAGTCCAAATGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCTATCCTTGTCATGCATGCACAGTTGAACACTAAGTCCAAATGT  900

seq1  GTTCCCA-GGGAGAGGCTGAA-CTCAAAAGGGTGGCATGGTGAAGAACTA  946
      ||||||| ||||||||||||| ||||||||||||||||||||||| ||||
seq2  GTTCCCAGGGGAGAGGCTGAACCTCAAAAGGGTGGCATGGTGAAG-ACTA  949

seq1  C-TCTCAGAAGTAAAAGCGTCAGGGTCAGCATCACTGGTATGCCAAGCAT  995
      | ||||||||||||||||||||||||||||||||||| ||||||| ||||
seq2  CTTCTCAGAAGTAAAAGCGTCAGGGTCAGCATCACTGTTATGCCAGGCAT  999

seq1  GACGAACGTCCAGCGGGGAGCGTTCTGGACTGGTGGGAGGGAGGTATTTA  1045
      |||||||||||||||||||||| ||||||||||| |||||||||||||||
seq2  GACGAACGTCCAGCGGGGAGCG-TCTGGACTGGT-GGAGGGAGGTATTTA  1047

seq1  TTGACAG  1052
      |||||||
seq2  TTGACAG  1054