BAC Information

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BAC

Clone NameB6Ng01-005G09
Chromosome14 (Build37)
Map Location 82,804,691 - 82,805,784
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005G09.bB6Ng01-005G09.g
ACCDH842545DH842546
length1,1591,099
definitionDH842545|Mus musculus domesticus DNA, BAC clone: B6Ng01-005G09, 5' end.DH842546|Mus musculus domesticus DNA, BAC clone: B6Ng01-005G09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggtttttttgttattccagac
aaatttgcaaattgctccttccaattcgttgaagaattgagttggaattt
tgatggggattgcattgaatctgtagattgctttttggcaagatagccat
ttttacatgttgatcctgccaatccatgagcatgggagatctttccatct
tctgagatcttctttaatttctttctttagagatttgaagttttatcata
cagatctttcacttccttagttagagtcacgccagatatttatattattg
tgactattgagaagggtgtgtttccctaatttcttctcagctgttatctt
gtatagagaaaggcatgactgttgagtttattttatcactacttcaccga
gctgtttatcagttaggagtctctgggagaattttaggacacttaataat
catacaatatatctggcaataatggatgtttgacttcctttccaatatga
ataccatgt
gaattctattgaataatcaaaagagaatctgatgctgtcatttgcattga
catgcatggagcatacattactacacagtgagataggctaagtaaaagaa
gacaaaaccatgatgttactgctcttcttttgaactaaaatgttaatttc
attcaaatagagagtagaatagttattacttgaagactcaagttaaatta
atttaaaaaaaataaggacggatgatacaaagagaataatgaatgaacaa
cttcatgaggtaagaggaataacttctattattttattgtagagtaagag
gacacagtctacaaccttttaaatactttgtgaagagctaaagtaggatc
ttgatgtttatattataaagaaataataatttaatgaaatcctaaaagaa
ataatacaatagttcccatatttgatcagtatatggtatcccaatctatc
aaactgcaaaaagaaattataaatgtttttcattataatgcaacaataaa
agtaattttgaaatattttacactaactaaaagtaaaatttttagccata
taaaaagatggtttctaatagaatatcaaatgtggtgacatcttagcaca
gtaagagaaatgttatgtaaactaagtgtaagatttaaacttttaaaatg
gtatctcctctcagaattttttttcatctttaagaaaataatttaatgtg
gacgaaaagattgctcagcaattaagaatacttcatgctcttccagacaa
ccatacgttgggtttacagaatcatctgttaactcacaactacctgtatc
tccagctttaaatttgtaaacctttaaaataggctacaatgaagactttt
attgacatcataaaattaaaatagaaaagtcaggtcaagtcattttatca
tggttttcttcatagtaagagtcttctgacagaatattaaatctgtaaat
tctaattatttaattcttcctctgaacatcctttacaaatttaggtatta
tatcatatattttagatattttgtgcttgttaaggttttaaaaataatga
gtatagttcaatttcttccgaagtatccatctttccattactcaatcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_82804691_82805784
seq2: B6Ng01-005G09.g_68_1166 (reverse)

seq1  CTGATT-AGTAATGG-AAGATGGATAATTTGG-AGAAATTG-ACTATACT  46
      |||||| |||||||| |||||||||| || || |||||||| ||||||||
seq2  CTGATTGAGTAATGGAAAGATGGATACTTCGGAAGAAATTGAACTATACT  50

seq1  CATTATTTTTAAAAACCTTAAC-AGCACAAATAATCTAAATATAT-TGAT  94
      |||||||||| ||||||||||| ||||||||  ||||||| |||| ||||
seq2  CATTATTTTT-AAAACCTTAACAAGCACAAAATATCTAAA-ATATATGAT  98

seq1  ATAATACCTAAATTTTGTAAAGGATGTTCAGAGG-AGAATTAAATATTTA  143
      |||||||||||| ||||||||||||||||||||| ||||||||||| |||
seq2  ATAATACCTAAA-TTTGTAAAGGATGTTCAGAGGAAGAATTAAATAATTA  147

seq1  GAA-TTACAGATTTAATATTCTGTCAGAAGACTCTTACTATGAAGAAAAC  192
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTACAGATTTAATATTCTGTCAGAAGACTCTTACTATGAAGAAAAC  197

seq1  CATGATTATATGACTTGACCTGACTTTTCTATTTTAATTTTATGATGTCA  242
      |||||| | |||||||||||||||||||||||||||||||||||||||||
seq2  CATGATAAAATGACTTGACCTGACTTTTCTATTTTAATTTTATGATGTCA  247

seq1  ATAAAAGTCTTCATTGTAGCCTTATTTTAAAGGTTTACAAATTTAAAGCT  292
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATAAAAGTCTTCATTGTAGCC-TATTTTAAAGGTTTACAAATTTAAAGCT  296

seq1  GGAGATACAGGTAGTTGTGAGTTAACAGATGATTCTGTAAA-CCAACGTA  341
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGAGATACAGGTAGTTGTGAGTTAACAGATGATTCTGTAAACCCAACGTA  346

seq1  TGGTTGTCTGGAAGAGCATGAAGTATTCTTAATTGCTGAGCAATCTTTTC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTCTGGAAGAGCATGAAGTATTCTTAATTGCTGAGCAATCTTTTC  396

seq1  GTCCACATTAAATTATTTTCTTAAAGATGAAAAAAAATTCTGAGAGGAGA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACATTAAATTATTTTCTTAAAGATGAAAAAAAATTCTGAGAGGAGA  446

seq1  TACCATTTTAAAAGTTTAAATCTTACACTTAGTTTACATAACATTTCTCT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTTTAAAAGTTTAAATCTTACACTTAGTTTACATAACATTTCTCT  496

seq1  TACTGTGCTAAGATGTCACCACATTTGATATTCTATTAGAAACCATCTTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGCTAAGATGTCACCACATTTGATATTCTATTAGAAACCATCTTT  546

seq1  TTATATGGCTAAAAATTTTACTTTTAGTTAGTGTAAAATATTTCAAAATT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGGCTAAAAATTTTACTTTTAGTTAGTGTAAAATATTTCAAAATT  596

seq1  ACTTTTATTGTTGCATTATAATGAAAAACATTTATAATTTCTTTTTGCAG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATTGTTGCATTATAATGAAAAACATTTATAATTTCTTTTTGCAG  646

seq1  TTTGATAGATTGGGATACCATATACTGATCAAATATGGGAACTATTGTAT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAGATTGGGATACCATATACTGATCAAATATGGGAACTATTGTAT  696

seq1  TATTTCTTTTAGGATTTCATTAAATTATTATTTCTTTATAATATAAACAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTTTAGGATTTCATTAAATTATTATTTCTTTATAATATAAACAT  746

seq1  CAAGATCCTACTTTAGCTCTTCACAAAGTATTTAAAAGGTTGTAGACTGT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCCTACTTTAGCTCTTCACAAAGTATTTAAAAGGTTGTAGACTGT  796

seq1  GTCCTCTTACTCTACAATAAAATAATAGAAGTTATTCCTCTTACCTCATG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTTACTCTACAATAAAATAATAGAAGTTATTCCTCTTACCTCATG  846

seq1  AAGTTGTTCATTCATTATTCTCTTTGTATCATCCGTCCTTATTTTTTTTA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTTCATTCATTATTCTCTTTGTATCATCCGTCCTTATTTTTTTTA  896

seq1  AATTAATTTAACTTGAGTCTTCAAGTAATAACTATTCTACTCTCTATTTG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTTAACTTGAGTCTTCAAGTAATAACTATTCTACTCTCTATTTG  946

seq1  AATGAAATTAACATTTTAGTTCAAAAGAAGAGCAGTAACATCATGGTTTT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATTAACATTTTAGTTCAAAAGAAGAGCAGTAACATCATGGTTTT  996

seq1  GTCTTCTTTTACTTAGCCTATCTCACTGTGTAGTAATGTATGCTCCATGC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTTTTACTTAGCCTATCTCACTGTGTAGTAATGTATGCTCCATGC  1046

seq1  ATGTCAATGCAAATGACAGCATCAGATTCTCTTTTGATTATTCAATAGAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAATGCAAATGACAGCATCAGATTCTCTTTTGATTATTCAATAGAA  1096

seq1  TTC  1094
      |||
seq2  TTC  1099