BAC Information

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BAC

Clone NameB6Ng01-006C02
Chromosome7 (Build37)14 (Build37)
Map Location 33,220,495 - 33,221,041123,661,319 - 123,662,342
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC626181, LOC100043334, LOC100043834, LOC546947, LOC677233, LOC100043337, LOC546949, LOC100043836, EG626305, EG668342, EG626330, LOC100043340, LOC100043343, EG626358, LOC668351, EG384593, LOC100043351, LOC100043352, LOC100043353, EG384594, LOC100043838, EG668361, LOC668362, EG624584, LOC100043355, LOC546951, EG626740, EG668371, EG668377, LOC100043842, LOC634929, EG668379, EG668381, LOC668386, LOC626373
Downstream geneEG384589, EG668393, EG330689, LOC100043362, LOC100043365, EG384591, LOC668398, EG384596, LOC100043370, LOC434161, EG270499, LOC100043845, LOC100043373, LOC668410, EG624439, LOC100043376, LOC100043379, LOC100043383, EG668411, LOC100043850, LOC100043386, LOC668416, EG668526, LOC100043388, LOC270234, EG668419, EG668422, EG546954, LOC100043856, LOC100043857, EG545947, EG434676, EG668431, Abpd, EG545948, LOC435963, LOC435962
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006C02.bB6Ng01-006C02.g
ACCDH843076DH843077
length8681,012
definitionDH843076|Mus musculus domesticus DNA, BAC clone: B6Ng01-006C02, 5' end.DH843077|Mus musculus domesticus DNA, BAC clone: B6Ng01-006C02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(33,220,495 - 33,221,041)(123,661,319 - 123,662,342)
sequence
gaattcttagggtcacttatatatactatcatatcatctgcaaaaagtga
tattttgacttcatcttttccaatttgtatccccttgatctccatttgtt
gtcgaattgctctggctaggacttcaagtacaattttgaataggtaggga
gagagtggacagccttgtctagtacctgattttagtgggatggtacaagc
ttctcaccatttactttgatgttggctactgatttggtgtaaattgcttt
tatcatggttaggtatgggccttgaattcctgatctttctaagactttta
tcatgaatgggtgttggatcttgtcaaatgctttttctgcatctaatgag
atgatcatgtggtttttgtctttgagtttgtttatataatggattacatt
gatggatttccacatattagaccatccctgcatccctggaataaaaccta
cttggtcaggatggatgattgctttaatgtgttcttggattcggttagtg
agaattttattgaggatttttgcatctatattcttaagggaaattggtct
gaagttctctatctttgttggatctttctgtggtttaggtatcagagtaa
ttgtggcttcatagaatgagttgggtagtgttccttctacttctattttg
tggaatagtttgtgaagaactggaattagatcttctttgaaggtctggta
gaactctgcactaaacacatctggtcctgggcttattttggctgggagac
tattaatgactgcttctattcctttagaggatatgggactgtttagatcg
taccttgatcctgttttaactttggtacctggtatctgtctagaaatttg
cccattttcgtccagttt
gaattctcctattgactgttattttttccttacaaaacctttttagtttc
atgaggtcccatttatcaattgctgatcttagaacctgaaacactggagt
tctgtttaggcaatttccccctgaaccagtgaattcaaggctttttccct
ctttctcttctatttgattcagtgtgtctgtttttatgttgaggtccttg
atatacttggacttgagctttgtacaaagtggtaaatatggatctatttt
ttatttttctacatacagactgccagttaaaccagcactatttatttaag
atgctttcttttttttctgttgttttttaagggtaacttctgagttgctt
actagctctgacttttgccccagagaggaaatgtttaattgtagattatt
caggtgagatgagacaggcttcatggtctctgctgggatcacactaagaa
aactctggcttccgagagaatcctaagtttttaattttaatttttattca
agccacactgatggttttacagtggaaacaaacaaacaaggtaaaacata
gattgtcctggcaatagtatgtttccacaatctcttcttatgttttatca
gtggatgtattctaattcccaaatcagaaagatgaaacctatccctatat
tcccaatcatttctcaaaaatcattaaagtattgacttgtcatttggcaa
aaactgtttactttgtgaactggctgctttcagaattatgtttaaggatt
caataacaatattcatgatgaatggtggtttgtagaaggtgacagaatca
tctctgcactaggggggaaattcatgtatcagttggtgtacaatgtctct
gttcaacatggagcccactgtagcattcaaattttcccttccacctataa
tgacttgatgatttcttatttctcctggtcagtgtgtttctaatagataa
acataacttaaatatgtttttttttttaagaagaactgattgttgcaagg
gattgaattaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_33220495_33221041
seq2: B6Ng01-006C02.b_377_913 (reverse)

seq1  AAACTGGAAAACCTGGATG-AAATGGACAAATTTCTAGACAGATACCAGG  49
               || ||||| | |||||| |||||||||||||||||||||||
seq2  ---------AAACTGGACGAAAATGGGCAAATTTCTAGACAGATACCAGG  41

seq1  TACCAAAGTTAAATCAGGATCAATTTAACGATCTAAACATTCCCATATCC  99
      ||||||||||||| |||||||||  | |||||||||||| ||||||||||
seq2  TACCAAAGTTAAAACAGGATCAAGGT-ACGATCTAAACAGTCCCATATCC  90

seq1  CCTAAAGAAATAGAATCAGTCATTAGTAGTCTCCCAGCCAAAAAAAAGCC  149
       |||||| ||||||| ||||||||| ||||||||||||| |||| |||||
seq2  TCTAAAGGAATAGAAGCAGTCATTAATAGTCTCCCAGCC-AAAATAAGCC  139

seq1  CAGGACCAGATGGGTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGAT  199
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAGGACCAGATGTGTTTAGTGCAGAGTTCTACCAGACCTTCAAAGAAGAT  189

seq1  CTAATTCCAGTTCTGCATAAAGTATTCCACAAAATAGAAGTAGATGGAAC  249
      |||||||||||||| || ||| |||||||||||||||||||||| |||||
seq2  CTAATTCCAGTTCTTCACAAACTATTCCACAAAATAGAAGTAGAAGGAAC  239

seq1  TCTACCCAACTCATTCTATGAAGCCACAATTACTCTGATACCTAAACCAC  299
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCCAACTCATTCTATGAAGCCACAATTACTCTGATACCTAAACCAC  289

seq1  AGAAAGATCCAAAAAAGATAGAGAACTTCAGACCAATTTCCCTTATGAAT  349
      |||||||||||| |||||||||||||||||||||||||||||||| ||||
seq2  AGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCCCTTAAGAAT  339

seq1  ATAGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGAATCCAAGAACA  399
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATAGATGCAAAAATCCTCAATAAAATTCTCACTAACCGAATCCAAGAACA  389

seq1  CATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGC  439

seq1  AGGGATGGTTTAATATTCGGAAATCCATCAACGTAATCCATTATATAAAC  499
      ||||||||| ||||||  ||||||||||||| ||||||||||||||||||
seq2  AGGGATGGTCTAATATGTGGAAATCCATCAATGTAATCCATTATATAAAC  489

seq1  AAACTCAAAGACAAAAACCACATGATCATCTCGTTAGATGCGGAAAAA  547
      |||||||||||||||||||||||||||||||| |||||||| ||||||
seq2  AAACTCAAAGACAAAAACCACATGATCATCTCATTAGATGCAGAAAAA  537

seq1: chr14_123661319_123662342
seq2: B6Ng01-006C02.g_66_1077 (reverse)

seq1  TTTAATTTTCAATCCCTCTGCAACAATACAGTTTCTTTCTTTAAAAAAAA  50
      |||||  |||||||||| ||||||||| |||||   ||||| ||||||||
seq2  TTTAA--TTCAATCCCT-TGCAACAAT-CAGTT--CTTCTTAAAAAAAAA  44

seq1  AACATATTTAAGTTATTGTTTTTATCTTATTAAGAAACACACTGACCAGG  100
      |||||||||||||||   | |||||| |||| ||||||||||||||||||
seq2  AACATATTTAAGTTA---TGTTTATC-TATT-AGAAACACACTGACCAGG  89

seq1  AGAAAATAAAGAAATCATCAAGTCATTATAGGTGGAAGGGAAAATTTGAA  150
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAA--TAAGAAATCATCAAGTCATTATAGGTGGAAGGGAAAATTTGAA  137

seq1  TGCTACAGTGGGCTCCATGTTGAACAGAGACATTGTACACCAACTGATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACAGTGGGCTCCATGTTGAACAGAGACATTGTACACCAACTGATAC  187

seq1  ATGAATTT-CCCCCTAGTGCAGAGATGATTCTGTCACCTTCTACAAACCA  249
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTTCCCCCCTAGTGCAGAGATGATTCTGTCACCTTCTACAAACCA  237

seq1  CCATTCATCATGAATATTGTTATTGAATCCTTAAACATAATTCTGAAAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCATCATGAATATTGTTATTGAATCCTTAAACATAATTCTGAAAGC  287

seq1  AGCCAGTTCACAAAGTAAACAGTTTTTGCCAAATGACAAGTCAATACTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTTCACAAAGTAAACAGTTTTTGCCAAATGACAAGTCAATACTTT  337

seq1  AATGATTTTTGAGAAATGATTGGGAATATAGGGATAGGTTTCATCTTTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTTTTGAGAAATGATTGGGAATATAGGGATAGGTTTCATCTTTCT  387

seq1  GATTTGGGAATTAGAATACATCCACTGATAAAACATAAGAAGAGATTGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGGAATTAGAATACATCCACTGATAAAACATAAGAAGAGATTGTG  437

seq1  GAAACATACTATTGCCAGGACAATCTATGTTTTACCTTGTTTGTTTGTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATACTATTGCCAGGACAATCTATGTTTTACCTTGTTTGTTTGTTT  487

seq1  CCACTGTAAAACCATCAGTGTGGCTTGAATAAAAATTAAAATTAAAAACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTAAAACCATCAGTGTGGCTTGAATAAAAATTAAAATTAAAAACT  537

seq1  TAGGATTCTCTCGGAAGCCAGAGTTTTCTTAGTGTGATCCCAGCAGAGAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTCTCTCGGAAGCCAGAGTTTTCTTAGTGTGATCCCAGCAGAGAC  587

seq1  CATGAAGCCTGTCTCATCTCACCTGAATAATCTACAATTAAACATTTCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGCCTGTCTCATCTCACCTGAATAATCTACAATTAAACATTTCCT  637

seq1  CTCTGGGGCAAAAGTCAGAGCTAGTAAGCAACTCAGAAGTTACCCTTAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGGCAAAAGTCAGAGCTAGTAAGCAACTCAGAAGTTACCCTTAAA  687

seq1  AAACAACAGAAAAAAAAGAAAGCATCTTAAATAAATAGTGCTGGTTTAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACAGAAAAAAAAGAAAGCATCTTAAATAAATAGTGCTGGTTTAAC  737

seq1  TGGCAGTCTGTATGTAGAAAAATAAAAAATAGATCCATATTTACCACTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTCTGTATGTAGAAAAATAAAAAATAGATCCATATTTACCACTTT  787

seq1  GTACAAAGCTCAAGTCCAAGTATATCAAGGACCTCAACATAAAAACAGAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAAGCTCAAGTCCAAGTATATCAAGGACCTCAACATAAAAACAGAC  837

seq1  ACACTGAATCAAATAGAAGAGAAAGAGGGAAAAAGCCTTGAATTCACTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAATCAAATAGAAGAGAAAGAGGGAAAAAGCCTTGAATTCACTGG  887

seq1  TTCAGGGGGAAATTGCCTAAACAGAACTCCAGTGTTTCAGGTTCTAAGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGGGAAATTGCCTAAACAGAACTCCAGTGTTTCAGGTTCTAAGAT  937

seq1  CAGCAATTGATAAATGGGACCTCATGAAACTAAAAAGGTTTTGTAAGGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATTGATAAATGGGACCTCATGAAACTAAAAAGGTTTTGTAAGGAA  987

seq1  AAAATAACAGTCAATAGGAGAATTC  1024
      |||||||||||||||||||||||||
seq2  AAAATAACAGTCAATAGGAGAATTC  1012