BAC Information

Click to search

BAC

Clone NameB6Ng01-006G02
Chromosome14 (Build37)
Map Location 24,999,687 - 25,186,979
singlet/doubletdoublet
Overlap geneDlg5, LOC100039335, E330034G19Rik
Upstream geneKcnma1, LOC620499
Downstream geneLOC669325, Polr3a, Rps24, LOC669315, LOC100039411
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006G02.bB6Ng01-006G02.g
ACCDH843256DH843257
length569269
definitionDH843256|Mus musculus domesticus DNA, BAC clone: B6Ng01-006G02, 5' end.DH843257|Mus musculus domesticus DNA, BAC clone: B6Ng01-006G02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,186,405 - 25,186,979)(24,999,687 - 24,999,955)
sequence
ttttccctgaagtcctaagtctctcgctctctctcacctaacttatcaaa
agtccttcccgcatccctggtcatctagtcagttccagactttaggctcc
aggaagaaagaactttccagcaacacttagagaaaacagggctatcatgg
tgattctcaggcttctgtccctgtgattgggttgcaggaagaaaggagaa
ggccacttgcctccagaatccatgacaatgagaagcacacatttggcatt
tgcactgggatattctccttgccagcagcttcccacccgtgatatcccat
gaccctgccatgcacacaagttccagaactgagacctcactcaaagctct
gtgcctagtaccccacctctcatgaggacatgtacacgtatgacatgtca
atcacctgtctcctttattggactgcagcttcaagcagagcagcaggata
tgcttgccaatgttcactttctcacaagagattaacttccccaaatactt
gtgcctagacagagaaatgaacaatcacagtacatgttatggggggctgg
ttgggagtgtggattagaa
ttggattacagcatgtgctatgtcccctaactttgtttcctgttcttttc
agaaactactcctttcaaaaagaaatcttagtacagtgaaatacaaaact
tatttacaaagtagaaggtaagcaaactctcaactgtgagagttaaggaa
acactttactctcagacaaacactgacacacacacaaaacctaggagcca
ttctgacaggaaaattgtccttaggaggaggaaggacgggcaaggagggg
aggacaggggagaggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_25186405_25186979
seq2: B6Ng01-006G02.b_47_621 (reverse)

seq1  TTCTAATCCACACTCCCAACCAGCCCCCCATAACATGTACTGTGATTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATCCACACTCCCAACCAGCCCCCCATAACATGTACTGTGATTGTT  50

seq1  CATTTCTCTGTCTAGGCACAAGTATTTGGGGAAGTTAATCTCTTGTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTCTGTCTAGGCACAAGTATTTGGGGAAGTTAATCTCTTGTGAGA  100

seq1  AAGTGAACATTGGCAAGCATATCCTGCTGCTCTGCTTGAAGCTGCAGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAACATTGGCAAGCATATCCTGCTGCTCTGCTTGAAGCTGCAGTCC  150

seq1  AATAAAGGAGACAGGTGATTGACATGTCATACGTGTACATGTCCTCATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGGAGACAGGTGATTGACATGTCATACGTGTACATGTCCTCATGA  200

seq1  GAGGTGGGGTACTAGGCACAGAGCTTTGAGTGAGGTCTCAGTTCTGGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGGGTACTAGGCACAGAGCTTTGAGTGAGGTCTCAGTTCTGGAAC  250

seq1  TTGTGTGCATGGCAGGGTCATGGGATATCACGGGTGGGAAGCTGCTGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGCATGGCAGGGTCATGGGATATCACGGGTGGGAAGCTGCTGGCA  300

seq1  AGGAGAATATCCCAGTGCAAATGCCAAATGTGTGCTTCTCATTGTCATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAATATCCCAGTGCAAATGCCAAATGTGTGCTTCTCATTGTCATGG  350

seq1  ATTCTGGAGGCAAGTGGCCTTCTCCTTTCTTCCTGCAACCCAATCACAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGAGGCAAGTGGCCTTCTCCTTTCTTCCTGCAACCCAATCACAGG  400

seq1  GACAGAAGCCTGAGAATCACCATGATAGCCCTGTTTTCTCTAAGTGTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAGCCTGAGAATCACCATGATAGCCCTGTTTTCTCTAAGTGTTGC  450

seq1  TGGAAAGTTCTTTCTTCCTGGAGCCTAAAGTCTGGAACTGACTAGATGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGTTCTTTCTTCCTGGAGCCTAAAGTCTGGAACTGACTAGATGAC  500

seq1  CAGGGATGCGGGAAGGACTTTTGATAAGTTAGGTGAGAGAGAGCGAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATGCGGGAAGGACTTTTGATAAGTTAGGTGAGAGAGAGCGAGAGA  550

seq1  CTTAGGACTTCAGGGAAAAGAATTC  575
      |||||||||||||||||||||||||
seq2  CTTAGGACTTCAGGGAAAAGAATTC  575

seq1: chr14_24999687_24999955
seq2: B6Ng01-006G02.g_72_340

seq1  TTGGATTACAGCATGTGCTATGTCCCCTAACTTTGTTTCCTGTTCTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTACAGCATGTGCTATGTCCCCTAACTTTGTTTCCTGTTCTTTTC  50

seq1  AGAAACTACTCCTTTCAAAAAGAAATCTTAGTACAGTGAAATACAAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTACTCCTTTCAAAAAGAAATCTTAGTACAGTGAAATACAAAACT  100

seq1  TATTTACAAAGTAGAAGGTAAGCAAACTCTCAACTGTGAGAGTTAAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACAAAGTAGAAGGTAAGCAAACTCTCAACTGTGAGAGTTAAGGAA  150

seq1  ACACTTTACTCTCAGACAAACACTGACACACACACAAAACCTAGGAGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTACTCTCAGACAAACACTGACACACACACAAAACCTAGGAGCCA  200

seq1  TTCTGACAGGAAAATTGTCCTTAGGAGGAGGAAGGACGGGCAAGGAGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACAGGAAAATTGTCCTTAGGAGGAGGAAGGACGGGCAAGGAGGGG  250

seq1  AGGACAGGGGAGAGGGGGA  269
      |||||||||||||||||||
seq2  AGGACAGGGGAGAGGGGGA  269