BAC Information

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BAC

Clone NameB6Ng01-006O12
Chromosome14 (Build37)
Map Location 92,667,126 - 92,852,589
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665377
Downstream geneLOC638252, Pcdh9, LOC668566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006O12.bB6Ng01-006O12.g
ACCDH843634DH843635
length1,1541,022
definitionDH843634|Mus musculus domesticus DNA, BAC clone: B6Ng01-006O12, 5' end.DH843635|Mus musculus domesticus DNA, BAC clone: B6Ng01-006O12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,851,427 - 92,852,589)(92,667,126 - 92,667,721)
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtccacctggcattaacattcttaacaatgtttctaagtgggt
gagtgagtctcctaacgtagagcaaaagtatgcaaatttgctttataatt
ggtaaagaccaaagatgaaaaccatggcaagcatgtgatagagaatggac
tcagccctagcaagtactggaaaggatggtaataattgtaactgcagaga
gagagaacatttaattgaagatcattattgttctttctttaaaaatttat
tcaagtcatcaaagatatacacaaatgacttgtgtggatagtttctcata
tttaaaccatcttccattgatttattttctacttgatgggattgacattt
attatcaaatgtttaatattctattattatcctcatttgaagattaaaaa
tatactttaagaaatagcttttcttatatctttatttctgtaattcattt
aaaaattgttggcaatatgctttgtttttcttggtggctatcagacagaa
aaagggatagaggagagagagagaaagagagagaatgagagagaaagaga
gagagaacattgggtgtcttataatccagaaaaatgcattttccacagct
gtagatgttctcagttttagatgaaggggtcagtatgtcataatcaggct
ctgttgaaggttgtttttcaggttgcagaatactttttgcattctcatag
gcaaatagcaccctagtcactgtttgcagtctgttttataaagataaaca
ttgtgttcatgagaactcatatcatctaattattttctaaacacatcgtc
tcctactaccatgggtttcaagcttaagatttctttctttttctttccaa
tttttattagatttttttcatttacatttcaaatgctatcccccataagc
tccccctgccctacccacccaattcccactcttggccctggtgtttcatc
tttgggaagagaggcccgttggccttgccaagctatgattttcaagtggg
tctgaagaaaggataaactcaccacatctaatgatagtattgctaactct
ctgtactttggaaaaaaaaagtttttctgatagatgcaatacctgttcta
actt
gaattcagtcagcttggaaagaagtttgaaccagaacagctgagttgaat
cagccaaccagagctcagaaagaactaggatggtatgagcatattgagca
gtaattctcacaggctgaaaatattctaggcccatgtaagatttcatgga
gtttagaaacttctagggctattcctaggttagccaatggagccagtaag
cctcctagatgacatttaaatcagaggaatgaagtaactgttacactcga
acttccctaacctctcaacttcctgtcctttattgatttatttatctata
agccatgaactacaatttgtgctgcatatatacttctatttttaagactt
tccattggtgcatgaaggacccaccaaaggccatacccttaaagaaatct
gactccctgtttcagagaatccctaaatagtccacagttccttgtttaag
gctagagcttagtgaacactactttgcttcctggtagatgtagactggaa
agatcttatccaggtcttacacctgtaatcaaagctcctatgagtttact
gtcatatccaaagggcactgcttgtgttggtcttccccaaattttgacat
ttacaatcttctagctccctcattcatgagtcttccagagtcatagggag
gtgaatttttactatagacaacccattttgtctgagcattccactgacag
ttactgtatacactttgaagagctgtgagtttccacattaaccactgtac
acttcaaaaagaaatatctttgatgaggctgagagctgtcttaatttatt
tgtagagacatagaaatttttagggcaatttgatcttattaccatttagt
acaataagagtaatgggattgccagtgagtcttttgagatctccagctat
gagttctcagtgaaatttacagtgccattcagagatttgtctcttaccca
gtgtgtgtgtgtgtacgtgtgtgtgtgtttgtgagattgtctgtgcatgt
gtgattatggtttatttgattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_92851427_92852589
seq2: B6Ng01-006O12.b_47_1200 (reverse)

seq1  AAGTTTTAAGAACAGTGATTGCATCATCCAGAAAACACTTTTTTTTCACA  50
      |||||   |||||||  ||||||||   ||||||| ||||||||||  ||
seq2  AAGTT---AGAACAGGTATTGCATCTATCAGAAAA-ACTTTTTTTTTCCA  46

seq1  AAGTACAGAGAGTTTAGCAATACTATCATTATGATGTGTTGAGTTTATCT  100
      |||||||||||| |||||||||||||||||| |||||| |||||||||| 
seq2  AAGTACAGAGAG-TTAGCAATACTATCATTA-GATGTGGTGAGTTTATCC  94

seq1  CTCTTTCAGAACCCACTTTGAAATCATAAGCTTTGCAAGGCCAACGGGCC  150
       |  ||||| ||||||||  ||||||| ||||| ||||||||||||||||
seq2  TTTCTTCAG-ACCCACTTGAAAATCAT-AGCTTGGCAAGGCCAACGGGCC  142

seq1  TCTCTTCCCAAAGATGGAACACCAGGGCCAAGAAGTGGGAA-TGGGTGGG  199
      |||||||||||||||| ||||||||||||||| |||||||| ||||||||
seq2  TCTCTTCCCAAAGATGAAACACCAGGGCCAAG-AGTGGGAATTGGGTGGG  191

seq1  TAGGGCAGGGGGAGCTTATGGGGGATAGCATTTGAAATGTAAATGAAAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCAGGGGGAGCTTATGGGGGATAGCATTTGAAATGTAAATGAAAAA  241

seq1  AATCTAATAAAAAATTGGAAAGAAAAAGAAAGAAATCTTAAGCTTGAAAC  299
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAT-AAAAATTGGAAAGAAAAAGAAAGAAATCTTAAGCTTGAAAC  290

seq1  CCATGGTAGTAGGAGACGATGTGTTTAGAAAATAATTAGATGATATGAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTAGTAGGAGACGATGTGTTTAGAAAATAATTAGATGATATGAGT  340

seq1  TCTCATGAACACAATGTTTATCTTTATAAAACAGACTGCAAACAGTGACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGAACACAATGTTTATCTTTATAAAACAGACTGCAAACAGTGACT  390

seq1  AGGGTGCTATTTGCCTATGAGAATGCAAAAAGTATTCTGCAACCTGAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGCTATTTGCCTATGAGAATGCAAAAAGTATTCTGCAACCTGAAAA  440

seq1  ACAACCTTCAACAGAGCCTGATTATGACATACTGACCCCTTCATCTAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTTCAACAGAGCCTGATTATGACATACTGACCCCTTCATCTAAAA  490

seq1  CTGAGAACATCTACAGCTGTGGAAAATGCATTTTTCTGGATTATAAGACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAACATCTACAGCTGTGGAAAATGCATTTTTCTGGATTATAAGACA  540

seq1  CCCAATGTTCTCTCTCTCTTTCTCTCTCATTCTCTCTCTTTCTCTCTCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGTTCTCTCTCTCTTTCTCTCTCATTCTCTCTCTTTCTCTCTCTC  590

seq1  TCCTCTATCCCTTTTTCTGTCTGATAGCCACCAAGAAAAACAAAGCATAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTATCCCTTTTTCTGTCTGATAGCCACCAAGAAAAACAAAGCATAT  640

seq1  TGCCAACAATTTTTAAATGAATTACAGAAATAAAGATATAAGAAAAGCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACAATTTTTAAATGAATTACAGAAATAAAGATATAAGAAAAGCTA  690

seq1  TTTCTTAAAGTATATTTTTAATCTTCAAATGAGGATAATAATAGAATATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAAAGTATATTTTTAATCTTCAAATGAGGATAATAATAGAATATT  740

seq1  AAACATTTGATAATAAATGTCAATCCCATCAAGTAGAAAATAAATCAATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTGATAATAAATGTCAATCCCATCAAGTAGAAAATAAATCAATG  790

seq1  GAAGATGGTTTAAATATGAGAAACTATCCACACAAGTCATTTGTGTATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGGTTTAAATATGAGAAACTATCCACACAAGTCATTTGTGTATAT  840

seq1  CTTTGATGACTTGAATAAATTTTTAAAGAAAGAACAATAATGATCTTCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATGACTTGAATAAATTTTTAAAGAAAGAACAATAATGATCTTCAA  890

seq1  TTAAATGTTCTCTCTCTCTGCAGTTACAATTATTACCATCCTTTCCAGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTTCTCTCTCTCTGCAGTTACAATTATTACCATCCTTTCCAGTA  940

seq1  CTTGCTAGGGCTGAGTCCATTCTCTATCACATGCTTGCCATGGTTTTCAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTAGGGCTGAGTCCATTCTCTATCACATGCTTGCCATGGTTTTCAT  990

seq1  CTTTGGTCTTTACCAATTATAAAGCAAATTTGCATACTTTTGCTCTACGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTCTTTACCAATTATAAAGCAAATTTGCATACTTTTGCTCTACGT  1040

seq1  TAGGAGACTCACTCACCCACTTAGAAACATTGTTAAGAATGTTAATGCCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGACTCACTCACCCACTTAGAAACATTGTTAAGAATGTTAATGCCA  1090

seq1  GGTGGACTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGACTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGC  1140

seq1  TAAACAAAGAATTC  1163
      ||||||||||||||
seq2  TAAACAAAGAATTC  1154

seq1: chr14_92667126_92667721
seq2: B6Ng01-006O12.g_499_1090

seq1  TCCACAGTTCCTTGTTTAAGGCTAGAGCTTAGTGAACACTACTTTGCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGTTCCTTGTTTAAGGCTAGAGCTTAGTGAACACTACTTTGCTTC  50

seq1  CTGGTAGATGTAGACTGGAAAGATCTTATCCAGGTCTTACACCTGTAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGATGTAGACTGGAAAGATCTTATCCAGGTCTTACACCTGTAATC  100

seq1  AAAGCTCCTATGAGTTTACTGTCATATCCAAAGGGCACTGCTTGTGTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCCTATGAGTTTACTGTCATATCCAAAGGGCACTGCTTGTGTTGG  150

seq1  TCTTCCCCAAATTTTGACATTTACAATCTTCTAGCTCCCTCATTCATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCCAAATTTTGACATTTACAATCTTCTAGCTCCCTCATTCATGAG  200

seq1  TCTTCCAGAGTCATAGGGAGGTGAATTTTTACTATAGACAACCCATTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAGAGTCATAGGGAGGTGAATTTTTACTATAGACAACCCATTTTG  250

seq1  TCTGAGCATTCCACTGACAGTTACTGTATACACTTTGAAGAGCTGTGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCATTCCACTGACAGTTACTGTATACACTTTGAAGAGCTGTGAGT  300

seq1  TTCCACATTAACCACTGTACACTTCAAAAAGAAATATCTTTGATGAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACATTAACCACTGTACACTTCAAAAAGAAATATCTTTGATGAGGCT  350

seq1  GAGAGCTGTCTTAATTTATTTGTAGAGACATAGAAATTTTTAGGGCAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTGTCTTAATTTATTTGTAGAGACATAGAAATTTTTAGGGCAATT  400

seq1  TGATCTTATTACCATTTAGTACAATAAGAGTAATGGGATTGCCAGTGAGG  450
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGATCTTATTACCATTTAGTACAATAAGAGTAATGGGATTGCCAGTGA-G  449

seq1  TCTTTTGAGATCTCCAGCTATGAGTTCTCAGTGAAATTTACAGTGCCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGAGATCTCCAGCTATGAGTTCTCAGTGAAATTTACAGTGCCATT  499

seq1  CAGAGATTTGTCTCTTACCCAGTGTGTGTGTGTGTACGTGTGTGTGTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATTTGTCTCTTACCCAGTGTGTGTGTGTGTACGTGTGTGTGTGTT  549

seq1  TGTGAGATTTGTCTGTGCATGTGTGAATTATGGTTTTATTTGATTT  596
      ||||||| ||||||||||||||||| ||||||| ||||||||||||
seq2  TGTGAGA-TTGTCTGTGCATGTGTG-ATTATGG-TTTATTTGATTT  592