BAC Information

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BAC

Clone NameB6Ng01-006P13
Chromosome14 (Build37)
Map Location 88,580,208 - 88,747,723
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665324, Tdrd3, LOC100043317, LOC100043780
Downstream geneLOC668624, LOC668625, Pcdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006P13.bB6Ng01-006P13.g
ACCDH843681DH843682
length75183
definitionDH843681|Mus musculus domesticus DNA, BAC clone: B6Ng01-006P13, 5' end.DH843682|Mus musculus domesticus DNA, BAC clone: B6Ng01-006P13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,580,208 - 88,580,941)(88,747,641 - 88,747,723)
sequence
gaattcctgctctgtctgacttcagtgatggagtgttacctaaaattgga
agataaaataaatcctcatctctccgagttgctttgttgtgatattttat
tatagcaattgaaaccctagtaatgaaactgaacttatttttaaaatcat
aatataacaattacatcatttcacttttctctttccttcaactaagccct
cccatatgcccatttttgatcttaattttttccaatttttttattagata
ttttcttcatttacatttcaaatgctatcccgaaaatcccctataccctc
cccctgccctgctcccctactgacccactcccacttcttggccctggtgt
tcccctgtactggggcatataaagtttgcaagaccaaggggcctctcttc
ccaatgacggccaactaggccatcttctgctacatatgcagctagagaca
tgagctctggggaatactggctagttcatattgttgttccacatatcggg
ttgcaaaccccttcagctacttgggtgatttctctagctcctccactggg
ggccctgtgttccatccaatagatgactgtgagcatccacttctgtgttt
gccagacactggcatagcatcacaagagacagctatatcatggtcctttc
agcaaaatcttgctggtgtatgcagagcgtgtgtttggtggctgattgtg
gaatggatcccgggtgggtagtctttggatgatccatcctttgtctcagc
t
ttcggtcatccttggagcatgaaaatatattgtatatacatatatataat
gtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_88580208_88580941
seq2: B6Ng01-006P13.b_43_773

seq1  GAATTCCTGCTCTGTCTGACTTCAGTGATGGAGTGTTACCTAAAATTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCTCTGTCTGACTTCAGTGATGGAGTGTTACCTAAAATTGGA  50

seq1  AGATAAAATAAATCCTCATCTCTCCGAGTTGCTTTGTTGTGATATTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAATAAATCCTCATCTCTCCGAGTTGCTTTGTTGTGATATTTTAT  100

seq1  TATAGCAATTGAAACCCTAGTAATGAAACTGAACTTATTTTTAAAATCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCAATTGAAACCCTAGTAATGAAACTGAACTTATTTTTAAAATCAT  150

seq1  AATATAACAATTACATCATTTCACTTTTCTCTTTCCTTCAACTAAGCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAACAATTACATCATTTCACTTTTCTCTTTCCTTCAACTAAGCCCT  200

seq1  CCCATATGCCCATTTTTGATCTTAATTTTTTCCAATTTTTTTATTAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATGCCCATTTTTGATCTTAATTTTTTCCAATTTTTTTATTAGATA  250

seq1  TTTTCTTCATTTACATTTCAAATGCTATCCCGAAAATCCCCTATACCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCATTTACATTTCAAATGCTATCCCGAAAATCCCCTATACCCTC  300

seq1  CCCCTGCCCTGCTCCCCTACTGACCCACTCCCACTTCTTGGCCCTGGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCCCTGCTCCCCTACTGACCCACTCCCACTTCTTGGCCCTGGTGT  350

seq1  TCCCCTGTACTGGGGCATATAAAGTTTGCAAGACCAAGGGGCCTCTCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGTACTGGGGCATATAAAGTTTGCAAGACCAAGGGGCCTCTCTTC  400

seq1  CCAATGACGGCCAACTAGGCCATCTTCTGCTACATATGCAGCTAGAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGACGGCCAACTAGGCCATCTTCTGCTACATATGCAGCTAGAGACA  450

seq1  TGAGCTCTGGGGAATACTGGCTAGTTCATATTGTTGTTCCACATATCGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCTGGGGAATACTGGCTAGTTCATATTGTTGTTCCACATATCGGG  500

seq1  TTGCAAACCCCTTCAGCTACTTGGGTGATTTCTCTAGCTCCTCCACTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAACCCCTTCAGCTACTTGGGTGATTTCTCTAGCTCCTCCACTGGG  550

seq1  GGCCCTGTGTTCCATCCAATAGATGACTGTGAGCATCCACTTCTGTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGTGTTCCATCCAATAGATGACTGTGAGCATCCACTTCTGTGTTT  600

seq1  GCCAGACACTGGCATAGCATCACAAGAGACAGCTATATCAGGGTCCTTTC  650
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCCAGACACTGGCATAGCATCACAAGAGACAGCTATATCATGGTCCTTTC  650

seq1  AGCAAAATCTTGCTGGTGTATGCAAGAGCGTGTGTTTGGTGGCTGATTGT  700
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGCAAAATCTTGCTGGTGTATGC-AGAGCGTGTGTTTGGTGGCTGATTGT  699

seq1  GGAATGGATCCCCGGGTGGGTTAGTCTTTGGATG  734
      ||||||||| |||||||||| |||||||||||||
seq2  GGAATGGAT-CCCGGGTGGG-TAGTCTTTGGATG  731

seq1: chr14_88747641_88747723
seq2: B6Ng01-006P13.g_74_156 (reverse)

seq1  CACACACACACACACACACACACAAACACACACATTATATATATGTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACAAACACACACATTATATATATGTATAT  50

seq1  ACAATATATTTTCATGCTCCAAGGATGACCGAA  83
      |||||||||||||||||||||||||||||||||
seq2  ACAATATATTTTCATGCTCCAAGGATGACCGAA  83