BAC Information

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BAC

Clone NameB6Ng01-009A04
Chromosome14 (Build37)7 (Build37)
Map Location 28,145,947 - 28,146,378113,695,474 - 113,696,409
singlet/doubletsingletsinglet
Overlap geneArhgef3
Upstream gene4933413J09Rik, Slmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1, Il17rd, LOC665333, LOC100040147
Downstream geneCcdc66, LOC665370, Erc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009A04.bB6Ng01-009A04.g
ACCDH845074DH845075
length489939
definitionDH845074|Mus musculus domesticus DNA, BAC clone: B6Ng01-009A04, 5' end.DH845075|Mus musculus domesticus DNA, BAC clone: B6Ng01-009A04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(28,145,947 - 28,146,378)(113,695,474 - 113,696,409)
sequence
aagaagaattttgaagtataggcgtagcattgggagctaagactttgaga
ctaagatcattactgtgacatcagaacaggttgagagagaaagattagaa
ggagaatgcagagcggaataacagaaactatggatagcataaaaaactaa
gagagcaatgtgcagaatacagagggaaagagaaaaaagaagaagctgca
gagagagcagaaggagcaggcaggctcctccttaccatggaacagaatag
gtcttttcttactaacaaggcaggtttagtcttattaaaggaacaaagct
ttcttcttacaaacttgggtttaattcatttagcattaaaagggtagaag
ctttttctttctctatgcaataaagattggagcacacttttcatccagaa
tgagttgagttctttctgcactggttcttgtttttttgctccgtatgcat
aatatgggtctgtgtgtgtgtgtgtgtgtgtgtgtgtgt
cggaattatttcataaagaagggtggaggcaaaaaggtttgtactttcaa
accaaaagtctttagccacaaacctcataggaatgtattttttttctcca
aatgaatcattagggtttcatggagtatttcaagctcttatatattggaa
tttcttagatttcttccaatctaatcatattctaaaatggggaacattta
agttacttaagaaccatagttcatttccacttctaattactcagatagct
catttctcattctgactgccttggggaaaaatgtctccagcctcccccaa
atccatcttccaaacaccagttcttgtggttgtcttttgggaatatgtca
ttctgtccacctcagctctgggcttctcaactatctgtagacttcttcta
tttactaccctacacactggtttattcacatcctaaatgcccctcatccc
agtctcccatttgtctctgagagggcagcaccctttccctaacctctcca
cccttttgtgcaccaagactctagaggattaggcatatcctcttcaatga
ggctagacaaggcagccctctactacatatgagtctgggtctcagaccca
cctatctatctatctatctatctatctatctatctatctatctatctatc
tatctatctatctgctttttgtttgttggctcagtctctgggagctccca
ggggtccaggttagtagactttgtgatttttctgtgtgattgccatcttt
ttgtgggtttttaatctttccccttcacaggggaaaatcttccttcttca
caggggtcccttgaacttcttccaatgttttttctatgggtgcctgcatc
tgtctcagtcagctgctgggtagagtctcagaggagtggtttgctagcct
catgtctgcatcattaatagtgtgaggcatcaatacttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_28145947_28146378
seq2: B6Ng01-009A04.b_479_545 (reverse)

seq1  ACACACACACACACACACACACACACACAGAGTCAGGGGAGAGGGCATGG  50
      |||||||||||||||||||||||||||||||  ||               
seq2  ACACACACACACACACACACACACACACAGACCCA---------------  35

seq1  CTGCTGCTCTGCTCAGAGGAATTACTAAGCTGGTCCAACCTCCCTCAAAA  100
          |  | |||  |  |||   |  || |  |   ||||          
seq2  ----TATTATGCATA-CGGAGCAAAAAAACAAG---AACC----------  67

seq1  TCAGACACTAGCCTGGCTCTGTGCTTGAGAGCCCTCCCTCTCATAGGGCA  150
                                                        
seq2  --------------------------------------------------  67

seq1  GCCTGTTGCTAACAGTCTTTGGTTACTCACACTCCGACTTAGAGTCCCAG  200
                                                        
seq2  --------------------------------------------------  67

seq1  GCAGATTCCCCAAATCCCAAATCAGCAAATAACAAAGCAGAGGGGAGGGC  250
                                                        
seq2  --------------------------------------------------  67

seq1  CTGAACCTGGAAACAAGGCAGAAACTGCACAGGGTTAAAAAAAATACTTT  300
                                                        
seq2  --------------------------------------------------  67

seq1  TAAAAATCGTTGGAATATCCCATAGACCACATACAAAACTTGTACATCCT  350
                                                        
seq2  --------------------------------------------------  67

seq1  ATTTCAAATTCCTGGCCTAGTATAACACACACACACCATTCATATGTATG  400
                                                        
seq2  --------------------------------------------------  67

seq1  TGTGTATCTTTAAGAATTTAAAAACAAGAACC  432
                                      
seq2  --------------------------------  67

seq1: chr7_113695474_113696409
seq2: B6Ng01-009A04.g_71_1007

seq1  GAATTCATTTCATAAAGAAGGGTGGAGGCAAAAAGGTTTGTACTTTCAAA  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATT-ATTTCATAAAGAAGGGTGGAGGCAAAAAGGTTTGTACTTTCAAA  49

seq1  CCAAAAGTCTTTAGCCACAAACCTCATAGGAATGTATTTTTTTTCTCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGTCTTTAGCCACAAACCTCATAGGAATGTATTTTTTTTCTCCAA  99

seq1  ATGAATCATTAGGGTTTCATGGAGTATTTCAAGCTCTTATATATTGGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCATTAGGGTTTCATGGAGTATTTCAAGCTCTTATATATTGGAAT  149

seq1  TTCTTAGATTTCTTCCAATCTAATCATATTCTAAAATGGGGAACATTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGATTTCTTCCAATCTAATCATATTCTAAAATGGGGAACATTTAA  199

seq1  GTTACTTAAGAACCATAGTTCATTTCCACTTCTAATTACTCAGATAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTAAGAACCATAGTTCATTTCCACTTCTAATTACTCAGATAGCTC  249

seq1  ATTTCTCATTCTGACTGCCTTGGGGAAAAATGTCTCCAGCCTCCCCCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCATTCTGACTGCCTTGGGGAAAAATGTCTCCAGCCTCCCCCAAA  299

seq1  TCCATCTTCCAAACACCAGTTCTTGTGGTTGTCTTTTGGGAATATGTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTCCAAACACCAGTTCTTGTGGTTGTCTTTTGGGAATATGTCAT  349

seq1  TCTGTCCACCTCAGCTCTGGGCTTCTCAACTATCTGTAGACTTCTTCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCACCTCAGCTCTGGGCTTCTCAACTATCTGTAGACTTCTTCTAT  399

seq1  TTACTACCCTACACACTGGTTTATTCACATCCTAAATGCCCCTCATCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTACCCTACACACTGGTTTATTCACATCCTAAATGCCCCTCATCCCA  449

seq1  GTCTCCCATTTGTCTCTGAGAGGGCAGCACCCTTTCCCTAACCTCTCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCATTTGTCTCTGAGAGGGCAGCACCCTTTCCCTAACCTCTCCAC  499

seq1  CCTTTTGTGCACCAAGACTCTAGAGGATTAGGCATATCCTCTTCAATGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGTGCACCAAGACTCTAGAGGATTAGGCATATCCTCTTCAATGAG  549

seq1  GCTAGACAAGGCAGCCCTCTACTACATATGAGTCTGGGTCTCAGACCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGACAAGGCAGCCCTCTACTACATATGAGTCTGGGTCTCAGACCCAC  599

seq1  CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCT  649

seq1  ATCTATCTATCTGCTTTTTGTTTGTTGGCTCAGTCTCTGGGAGCTCCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTATCTGCTTTTTGTTTGTTGGCTCAGTCTCTGGGAGCTCCCAG  699

seq1  GGGTCCAGGTTAGTAGACTTTGTGATTTTTCTGTGTGATTGCCATCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCAGGTTAGTAGACTTTGTGATTTTTCTGTGTGATTGCCATCTTTT  749

seq1  TGTGGGTTTTTAATCTTTCCCCTTCACAGGGGAAAATCTTCCTTCTTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTTTTTAATCTTTCCCCTTCACAGGGGAAAATCTTCCTTCTTCAC  799

seq1  AGGGGTCCC-TGAACTCCTTCCAATG-TTTTTCTATGGGTGCCTGCATCT  848
      ||||||||| |||||| ||||||||| |||||||||||||||||||||||
seq2  AGGGGTCCCTTGAACTTCTTCCAATGTTTTTTCTATGGGTGCCTGCATCT  849

seq1  GTCTCAGTCAGCTGCTGGGTAGAGTCTCAGAGGAGTGGTTTGCTAGCCTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGTCAGCTGCTGGGTAGAGTCTCAGAGGAGTGGTTTGCTAGCCTC  899

seq1  ATGTCTGCATCATTAATAGTGTGAGGCATCAATACCTG  936
      ||||||||||||||||||||||||||||||||||| ||
seq2  ATGTCTGCATCATTAATAGTGTGAGGCATCAATACTTG  937