BAC Information

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BAC

Clone NameB6Ng01-009A18
Chromosome14 (Build37)
Map Location 30,319,576 - 30,496,497
singlet/doubletdoublet
Overlap geneCacna2d3
Upstream geneWnt5a, LOC100040218, Lrtm1, Ppia-ps15
Downstream geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d, LOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009A18.bB6Ng01-009A18.g
ACCDH845100DH845101
length1,104184
definitionDH845100|Mus musculus domesticus DNA, BAC clone: B6Ng01-009A18, 5' end.DH845101|Mus musculus domesticus DNA, BAC clone: B6Ng01-009A18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,495,378 - 30,496,497)(30,319,576 - 30,319,759)
sequence
gaattctggcactaagactgccccagtgggccctaaaagtcagggtggct
aggaccctggtattggtacttagtgaaggcattggtgaaaaccgcagctt
cagaacggatgctggaaggtagatagatcaactttgtttttctcgttcac
tgcctgttattaggatcatcataggcatttcccggttcactgtcaaatct
aaggaaattaagttcattacgtttttgtcatgcatgaaccataattctcg
agggctctttaagtttcctgtccagttactaatcttaattttttttttct
gaagacagtcactagcccgttttataatcagcatttcccttcatttaggc
ttttgggaattttatgctatatttttccccactgagatcagtgttttgtg
ccaaagaaataagaaattaaacggtctgaagtaatgagatggagcgaggc
cattttgccagaggaggagtgtggtcagaggttgctccaatgggctgtgt
gtggatagcactgcacttggggagttgctgtggagaatgccactggaaaa
ggaggttggcatataggggacacctgctggaggatgggctctctgtcctt
aggatgtcagcaagcacataaagaatggcttcatgcagcatgaaggctac
tcccttcaggcacatatatcagtctgggattctcagctctgcatggattt
ctaaccagcaatggcgccagcttcctgtaccgttgtagctctttcatacc
gaatacagaattttgtacctctctgccagatcctgaccaggcttgtggcc
acatgaagactgcctcctgggaaaaggaagatagcagatacaaatggcat
gtgaatgccatccgtcctcatgatgaggttaaggcatgtactatcttact
ttgctgatcactccaagtcgtatacatggaaacacatgtcatgttctctt
gagtggagctcatatgatccaggggccaggaatctgagtctctaagccta
gagttaatctcctttacttctgtgtgagactagccactgagtctgggtac
tgtgacatgacgtttagaggaatatgagacaaattccagccaggacctta
gaaa
ttaaattgttacctattatgcctttatcatgacaatgatagattctcttt
attgacccatagggtactgagaacagagaagagaagagaagagaagagaa
gagaagagaagagaagagaagagaagagaagagaagagaagagaagagaa
gagaagagaagagaagaggggaggggaggagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_30495378_30496497
seq2: B6Ng01-009A18.b_47_1150 (reverse)

seq1  TTTCTAAGGTCCTTGGGCTGGAATTTTGTCTCATTTATTCCCTCTTAAAC  50
      |||||||||||||  |||||||| |||||||||  |||| |||| |||||
seq2  TTTCTAAGGTCCT--GGCTGGAA-TTTGTCTCA--TATT-CCTC-TAAAC  43

seq1  GTCAATGTCACCAGTACCCAGACTCAGTGGCTAGTTCTCACACAGAAGTA  100
      ||| |||||| ||||||||||||||||||||||| |||||||||||||||
seq2  GTC-ATGTCA-CAGTACCCAGACTCAGTGGCTAG-TCTCACACAGAAGTA  90

seq1  AAGGGAGATTAACTCTAAGGCTTAAGAGACTCAAGATTCCTGGCCCCTGG  150
      || ||||||||||||| |||||| |||||||| |||||||||||||||||
seq2  AA-GGAGATTAACTCT-AGGCTT-AGAGACTC-AGATTCCTGGCCCCTGG  136

seq1  ATCATATGAGCTCCACTCAAGAGAACATGACATGTGTTTCCATGTATACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATGAGCTCCACTCAAGAGAACATGACATGTGTTTCCATGTATACG  186

seq1  ACTTGGAGTGATCAGCAAAGTAAGATAGTACATGCCTTTAACCTCATCAT  250
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACTTGGAGTGATCAGCAAAGTAAGATAGTACATGCC-TTAACCTCATCAT  235

seq1  GAGGACGGATGGCATTCACATGCCATTTGTATCCTGCTATCTTCCTTTTC  300
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAGGACGGATGGCATTCACATGCCATTTGTAT-CTGCTATCTTCCTTTTC  284

seq1  CCAGGAGGCAGTCTTCATGTGGCCACAAGCCTGGTCAGGATCTGGCAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGGCAGTCTTCATGTGGCCACAAGCCTGGTCAGGATCTGGCAGAG  334

seq1  AGGTACAAAATTCTGTATTCGGTATGAAAGAGCTACAACGGTACAGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACAAAATTCTGTATTCGGTATGAAAGAGCTACAACGGTACAGGAAG  384

seq1  CTGGCGCCATTGCTGGTTAGAAATCCATGCAGAGCTGAGAATCCCAGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGCCATTGCTGGTTAGAAATCCATGCAGAGCTGAGAATCCCAGACT  434

seq1  GATATATGTGCCTGAAGGGAGTAGCCTTCATGCTGCATGAAGCCATTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATGTGCCTGAAGGGAGTAGCCTTCATGCTGCATGAAGCCATTCTT  484

seq1  TATGTGCTTGCTGACATCCTAAGGACAGAGAGCCCATCCTCCAGCAGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCTTGCTGACATCCTAAGGACAGAGAGCCCATCCTCCAGCAGGTG  534

seq1  TCCCCTATATGCCAACCTCCTTTTCCAGTGGCATTCTCCACAGCAACTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTATATGCCAACCTCCTTTTCCAGTGGCATTCTCCACAGCAACTCC  584

seq1  CCAAGTGCAGTGCTATCCACACACAGCCCATTGGAGCAACCTCTGACCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGCAGTGCTATCCACACACAGCCCATTGGAGCAACCTCTGACCAC  634

seq1  ACTCCTCCTCTGGCAAAATGGCCTCGCTCCATCTCATTACTTCAGACCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCCTCTGGCAAAATGGCCTCGCTCCATCTCATTACTTCAGACCGT  684

seq1  TTAATTTCTTATTTCTTTGGCACAAAACACTGATCTCAGTGGGGAAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCTTATTTCTTTGGCACAAAACACTGATCTCAGTGGGGAAAAAT  734

seq1  ATAGCATAAAATTCCCAAAAGCCTAAATGAAGGGAAATGCTGATTATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATAAAATTCCCAAAAGCCTAAATGAAGGGAAATGCTGATTATAAA  784

seq1  ACGGGCTAGTGACTGTCTTCAGAAAAAAAAAATTAAGATTAGTAACTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGCTAGTGACTGTCTTCAGAAAAAAAAAATTAAGATTAGTAACTGGA  834

seq1  CAGGAAACTTAAAGAGCCCTCGAGAATTATGGTTCATGCATGACAAAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAACTTAAAGAGCCCTCGAGAATTATGGTTCATGCATGACAAAAAC  884

seq1  GTAATGAACTTAATTTCCTTAGATTTGACAGTGAACCGGGAAATGCCTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGAACTTAATTTCCTTAGATTTGACAGTGAACCGGGAAATGCCTAT  934

seq1  GATGATCCTAATAACAGGCAGTGAACGAGAAAAACAAAGTTGATCTATCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATCCTAATAACAGGCAGTGAACGAGAAAAACAAAGTTGATCTATCT  984

seq1  ACCTTCCAGCATCCGTTCTGAAGCTGCGGTTTTCACCAATGCCTTCACTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCAGCATCCGTTCTGAAGCTGCGGTTTTCACCAATGCCTTCACTA  1034

seq1  AGTACCAATACCAGGGTCCTAGCCACCCTGACTTTTAGGGCCCACTGGGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCAATACCAGGGTCCTAGCCACCCTGACTTTTAGGGCCCACTGGGG  1084

seq1  CAGTCTTAGTGCCAGAATTC  1120
      ||||||||||||||||||||
seq2  CAGTCTTAGTGCCAGAATTC  1104

seq1: chr14_30319576_30319759
seq2: B6Ng01-009A18.g_73_256

seq1  TTAAATTGTTACCTATTATGCCTTTATCATGACAATGATAGATTCTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTGTTACCTATTATGCCTTTATCATGACAATGATAGATTCTCTTT  50

seq1  ATTGACCCATAGGGTACTGAGAACAGAGAAGAGAAGAGAAGAGAAGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACCCATAGGGTACTGAGAACAGAGAAGAGAAGAGAAGAGAAGAGAA  100

seq1  GAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAA  150

seq1  GAGAAGAGAAGAGAAGAGGGGAGGGGAGGAGAAA  184
      ||||||||||||||||||||||||||||||||||
seq2  GAGAAGAGAAGAGAAGAGGGGAGGGGAGGAGAAA  184