BAC Information

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BAC

Clone NameB6Ng01-009D20
Chromosome14 (Build37)
Map Location 28,324,089 - 28,437,289
singlet/doubletdoublet
Overlap geneLOC665370, Erc2
Upstream geneSlmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1, Il17rd, LOC665333, Arhgef3, LOC100040147, Ccdc66
Downstream geneLOC100040206, Wnt5a, LOC100040218
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009D20.bB6Ng01-009D20.g
ACCDH845235DH845236
length1,130699
definitionDH845235|Mus musculus domesticus DNA, BAC clone: B6Ng01-009D20, 5' end.DH845236|Mus musculus domesticus DNA, BAC clone: B6Ng01-009D20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,436,152 - 28,437,289)(28,324,089 - 28,324,787)
sequence
gaattctctctattcatgttcaaaaacatcttataaacctaccaaatctg
atgtaagagccaaactacatactcagaaacagtgtgagttcacaaggaca
agggtagggtgaccacaggagacggcgagccacacccttctctagatagc
tcaacagtaagtgcatctcttctaaagaagactgcgattctgaaggaaag
gtagatcattccaacctgccgtcccagcagccagcccatgcccgcttcgc
tctttatacagattgatttcatgtttaagccaacgacctcggcatccaca
gctacaactagtgacggacaggaaagacaggaggagaacacaggttgaac
atacttgcttctaagcccattgtcgaggagttggcttcccgcttctctgc
ttctcacagctggagtcctacctggtggaaaccaatggttaagtaaaacc
actgatttaaagagccaaccaggaaactaaccaagacaagtgggagcagc
cctcctctcccgagcattgattggctcttggggttccaccggtcccattc
tatacacataagtggcaggtgcggctgtcagtcacgaagagaactgacaa
ttcaccgctctgggagtaaattgtctttcatccagcaaaggcaggtagcc
gcctaaaatcgatcttctcctaagggagcggaccctccctctggcaagga
ggagaaagacccctaactacaaaataaattatgtagggctaaacagggga
gagtttgtgggtactatttgattttcacacaccgaaagagcccttattct
tcactgtcctaaaaatgatctttcaaaggctcatacaggaataataataa
taataatttttaaaggtacctccttgtaagtacccctttgtgtaattagg
aggtggggagagaatcggtaggaatgctgtttaatttcacatcgtatcct
ttttcatacaccacctcctacccctcccagtaatcatcttcattttccca
ggcatgatttttctttttataactgcatcccttcccggccccctttccct
ggagccaccagaacaggcaggctcccaccctgaggctgggggttcctgtc
ttttctccacttatttagcttcgattctga
gaattccaggtcagcaagagctacataaaaagcctatgtgttatatataa
aataaataaataaataaaagggctagagtcggcaggttaatagacatttt
ctgggaggtagagtagtgtgaatttgaaagtcttacctttttctttgagt
tagtgtggcatgtatacatgcaaggtgtgagttctcatgtgtgctcgagt
gggtgcacacacacatgtgcgaggccacaggtggatggagactggggttt
tcttccctatttctctccctttgtatattgaaggctttctcacgtggagc
ccagagtttgctaactcagctggtttatctagccagctcgccctacccca
tctctgctgtgggggtctcagcaaataccagggccagcaaaatgtctgtt
tgcaggaggcaaggcaaaagctcagttcaactcaactcagtagccagtgt
tggttccagttttgacagcctggctccgagtggcttttttcaggcatatt
taaagccagcacaatgtggaaaacttttttctggtgataaataactcaac
gcagtatgtacaacaaaacttgacaagatttcatctaaactcttgtaaag
tgcacgtaacatcctccatatggataggttctattgattaactaaggaag
caggctcaagggaaacagcactcatagggacctggggggggggggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_28436152_28437289
seq2: B6Ng01-009D20.b_47_1176 (reverse)

seq1  TCAGAATCGGAAGCTGAATAAAGTGGAG--AAGACAGGACCCCCCAGCCT  48
      |||||||| |||||| ||| ||||||||  ||||||||| ||||||||||
seq2  TCAGAATC-GAAGCTAAAT-AAGTGGAGAAAAGACAGGAACCCCCAGCCT  48

seq1  CAGGGGTTGTGAGCCTGGCTGTCTGGGTGGGCTCCAGGGGAAAGGGGGGC  98
      |||||  || ||||||| ||||   ||| ||||||||||  || ||||||
seq2  CAGGG--TGGGAGCCTGCCTGTTCTGGT-GGCTCCAGGG--AAAGGGGGC  93

seq1  GGGGAAGGGATGCAGGTTATAAAAAGAAAAATTCATGCCTGGGAAAATGA  148
       ||||||||||||| |||||||||||||||| ||||||||||||||||||
seq2  CGGGAAGGGATGCA-GTTATAAAAAGAAAAA-TCATGCCTGGGAAAATGA  141

seq1  AGATGATTTACTGGGGAGGGGTAGGAGGTGGTGTATGAAAAAGGATACGA  198
      |||||| ||||| |||||||||||||||||||||||||||||||||||||
seq2  AGATGA-TTACT-GGGAGGGGTAGGAGGTGGTGTATGAAAAAGGATACGA  189

seq1  TGTGAAATTAAACAGCATTCCTACCGATTCTCTCCCCACCTCCTAATTAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAATTAAACAGCATTCCTACCGATTCTCTCCCCACCTCCTAATTAC  239

seq1  AC-AAGGGGTACTTACAAGGAGGTACCTTTAAAAATTATTATTATTATTA  297
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGGGTACTTACAAGGAGGTACCTTTAAAAATTATTATTATTATTA  289

seq1  TTCCTGTATGAGCCTTTGAAAGATCATTTTTAGGACAGTGAAGAATAAGG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTATGAGCCTTTGAAAGATCATTTTTAGGACAGTGAAGAATAAGG  339

seq1  GCTCTTTCGGTGTGTGAAAATCAAATAGTACCCACAAACTCTCCCCTGTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTCGGTGTGTGAAAATCAAATAGTACCCACAAACTCTCCCCTGTT  389

seq1  TAGCCCTACATAATTTATTTTGTAGTTAGGGGTCTTTCTCCTCCTTGCCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTACATAATTTATTTTGTAGTTAGGGGTCTTTCTCCTCCTTGCCA  439

seq1  GAGGGAGGGTCCGCTCCCTTAGGAGAAGATCGATTTTAGGCGGCTACCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGGGTCCGCTCCCTTAGGAGAAGATCGATTTTAGGCGGCTACCTG  489

seq1  CCTTTGCTGGATGAAAGACAATTTACTCCCAGAGCGGTGAATTGTCAGTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCTGGATGAAAGACAATTTACTCCCAGAGCGGTGAATTGTCAGTT  539

seq1  CTCTTCGTGACTGACAGCCGCACCTGCCACTTATGTGTATAGAATGGGAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCGTGACTGACAGCCGCACCTGCCACTTATGTGTATAGAATGGGAC  589

seq1  CGGTGGAACCCCAAGAGCCAATCAATGCTCGGGAGAGGAGGGCTGCTCCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGAACCCCAAGAGCCAATCAATGCTCGGGAGAGGAGGGCTGCTCCC  639

seq1  ACTTGTCTTGGTTAGTTTCCTGGTTGGCTCTTTAAATCAGTGGTTTTACT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTCTTGGTTAGTTTCCTGGTTGGCTCTTTAAATCAGTGGTTTTACT  689

seq1  TAACCATTGGTTTCCACCAGGTAGGACTCCAGCTGTGAGAAGCAGAGAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATTGGTTTCCACCAGGTAGGACTCCAGCTGTGAGAAGCAGAGAAG  739

seq1  CGGGAAGCCAACTCCTCGACAATGGGCTTAGAAGCAAGTATGTTCAACCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAAGCCAACTCCTCGACAATGGGCTTAGAAGCAAGTATGTTCAACCT  789

seq1  GTGTTCTCCTCCTGTCTTTCCTGTCCGTCACTAGTTGTAGCTGTGGATGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTCCTCCTGTCTTTCCTGTCCGTCACTAGTTGTAGCTGTGGATGC  839

seq1  CGAGGTCGTTGGCTTAAACATGAAATCAATCTGTATAAAGAGCGAAGCGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGTCGTTGGCTTAAACATGAAATCAATCTGTATAAAGAGCGAAGCGG  889

seq1  GCATGGGCTGGCTGCTGGGACGGCAGGTTGGAATGATCTACCTTTCCTTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGCTGGCTGCTGGGACGGCAGGTTGGAATGATCTACCTTTCCTTC  939

seq1  AGAATCGCAGTCTTCTTTAGAAGAGATGCACTTACTGTTGAGCTATCTAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCGCAGTCTTCTTTAGAAGAGATGCACTTACTGTTGAGCTATCTAG  989

seq1  AGAAGGGTGTGGCTCGCCGTCTCCTGTGGTCACCCTACCCTTGTCCTTGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGTGTGGCTCGCCGTCTCCTGTGGTCACCCTACCCTTGTCCTTGT  1039

seq1  GAACTCACACTGTTTCTGAGTATGTAGTTTGGCTCTTACATCAGATTTGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACACTGTTTCTGAGTATGTAGTTTGGCTCTTACATCAGATTTGG  1089

seq1  TAGGTTTATAAGATGTTTTTGAACATGAATAGAGAGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTATAAGATGTTTTTGAACATGAATAGAGAGAATTC  1130

seq1: chr14_28324089_28324787
seq2: B6Ng01-009D20.g_66_764

seq1  GAATTCCAGGTCAGCAAGAGCTACATAAAAAGCCTATGTGTTATATATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTCAGCAAGAGCTACATAAAAAGCCTATGTGTTATATATAA  50

seq1  AATAAATAAATAAATAAAAGGGCTAGAGTCGGCAGGTTAATAGACATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATAAATAAAAGGGCTAGAGTCGGCAGGTTAATAGACATTTT  100

seq1  CTGGGAGGTAGAGTAGTGTGAATTTGAAAGTCTTACCTTTTTCTTTGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGGTAGAGTAGTGTGAATTTGAAAGTCTTACCTTTTTCTTTGAGT  150

seq1  TAGTGTGGCATGTATACATGCAAGGTGTGAGTTCTCATGTGTGCTCGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGGCATGTATACATGCAAGGTGTGAGTTCTCATGTGTGCTCGAGT  200

seq1  GGGTGCACACACACATGTGCGAGGCCACAGGTGGATGGAGACTGGGGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCACACACACATGTGCGAGGCCACAGGTGGATGGAGACTGGGGTTT  250

seq1  TCTTCCCTATTTCTCTCCCTTTGTATATTGAAGGCTTTCTCACGTGGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCTATTTCTCTCCCTTTGTATATTGAAGGCTTTCTCACGTGGAGC  300

seq1  CCAGAGTTTGCTAACTCAGCTGGTTTATCTAGCCAGCTCGCCCTACCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTTTGCTAACTCAGCTGGTTTATCTAGCCAGCTCGCCCTACCCCA  350

seq1  TCTCTGCTGTGGGGGTCTCAGCAAATACCAGGGCCAGCAAAATGTCTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTGTGGGGGTCTCAGCAAATACCAGGGCCAGCAAAATGTCTGTT  400

seq1  TGCAGGAGGCAAGGCAAAAGCTCAGTTCAACTCAACTCAGTAGCCAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAGGCAAGGCAAAAGCTCAGTTCAACTCAACTCAGTAGCCAGTGT  450

seq1  TGGTTCCAGTTTTGACAGCCTGGCTCCGAGTGGCTTTTTTCAGGCATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCAGTTTTGACAGCCTGGCTCCGAGTGGCTTTTTTCAGGCATATT  500

seq1  TAAAGCCAGCACAATGTGGAAAACTTTTTTCTGGTGATAAATAACTCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCAGCACAATGTGGAAAACTTTTTTCTGGTGATAAATAACTCAAC  550

seq1  GCAGTATGTACAACAAAACTTGACAAGATTTCATCTAAACTCTTGTAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATGTACAACAAAACTTGACAAGATTTCATCTAAACTCTTGTAAAG  600

seq1  TGCACGTAACATCCTCCATATGGATAGGTTCTATTGATTAACTAAGGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGTAACATCCTCCATATGGATAGGTTCTATTGATTAACTAAGGAAG  650

seq1  CAGGCTCAAGGGAAACAGCACTCATAGGGACCTGGGGGGGGGGGGAGGA  699
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCAAGGGAAACAGCACTCATAGGGACCTGGGGGGGGGGGGAGGA  699