BAC Information

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BAC

Clone NameB6Ng01-009K17
Chromosome14 (Build37)
Map Location 70,280,388 - 70,414,485
singlet/doubletdoublet
Overlap gene1700081D17Rik, LOC668397
Upstream geneLOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701
Downstream geneEgr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2, Gfra2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009K17.bB6Ng01-009K17.g
ACCDH845549DH845550
length1,1801,046
definitionDH845549|Mus musculus domesticus DNA, BAC clone: B6Ng01-009K17, 5' end.DH845550|Mus musculus domesticus DNA, BAC clone: B6Ng01-009K17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,413,296 - 70,414,485)(70,280,388 - 70,281,448)
sequence
gaattccacattctacctgagaagtatttgatccccatgggtgctttatt
gctgctttatttactacagcgaggaaatggaactaacgtagtggtctaag
cagatgaagctgtagtgaaatctggtactgacatgcaagtggaatactat
tcagctctaaagaaaaatgaaatcacaaaacttgcaagaaaatagatttg
gaaaagatgatattaggcaaggtcatgcaagctcagaatgaaaaaagaaa
ccctcacgttctccctcatacggggaccccaggccccttctgtgtacaga
tgtgtatgtattcaaagaatgtacataggatcgctgcacaacgtatagaa
aggagaccaggaaaggctaaatgttcagtgacaaggaagggagggatgca
ggtgaagggcttgagtcatgaaagaggaaatgaaattgtgtttccagttg
tttgtttgtttgttttgttttttcctttttggcacctggtgaaataagcg
cttgaaaacacagttgagcgaaggtgtaagatccacgtgaagttacacag
cttcgggatggccattctaactgtgtggaaggtcattggacctggctaat
tctgctgtatgtttttccatttgacagacagttctttataataatgtttt
aatcaacaataacaacaataataaaaataataataaaagcaaggaaggtg
aacactgacaccagagaggttatcctgtgacctcacatactgtgacacac
acacacacacacacacacacacacacacacacacaccgccaacaaaacca
aaatctgtatctttctgaggactacttggttatgattttacttttggctc
cacggactgagatcaattttcctccaaccgagctgccttcaaatgtttca
ttacccacagtgtcgatttaatcaggtgacccctgctcgttagggtcatc
tgatctctgatcttcgctttcaaagacctcagctcaggcctgtttttctc
aaaggattcctagagcttggtggctgctctcttggcagaatagaagctgt
ctatccctttttctcggagggagactctcaaggaattagaatctattcta
aggatgaatgttagtcgtaccgaattgagcttttctctctcgaatggaga
gatcataaactcttggacacagggtgatac
gaattctagcctcacgtttgtaccaggcagagagatgttgaggcacccag
cattgtgaaattctgactcctatgtggtggctttcccctctgccctgatg
ctccaccaacggccatgggagacactggtaaactgcttagcctctactgg
cacaaagtgagaggcaggcccaggacaggatgtcaagggaggtgagaaat
gaaatatccattatcacaaaaatctctgtgaacaagaaagaggtaggagt
ggctggctcagcccccaagaggtccatggagacagaatggaaggatgacg
aggggagatcagagaagaccctgcttagcctgagtgtgaagcctcaggga
tggattccatataatgcaactcccagttaaagaagccatagttggaaagg
aggggccaccagaagcaaaagtcaacaatgactggctatcagtggctgtt
aactctaattcatcatctccctaggtcagatcatcacaattccacactga
ggctgggacaatggatctcggagctctattctctgttctttggattagcc
tccaacctcctccaggctcccatgccaccctgtattatcgtagccctcat
acatactatgtcaagaagtgatatgctggaagcatatcccaaattctggt
accagcagctttatggcagctctctgccacacatcacacctgtcccaggg
agcaagaagcactaggaggcggtaaccaggcgctcagacagacaagctag
catgaagaaagccctgcggatgtgaggttctataccactcagttctagaa
tgacagggagatgtcatctcctctgaggaacatggtagagactgattcaa
gcccgagacacaggacaacttatttgagataggatctaaagacgagttca
ttagcaaatggaactgtagataaaagggccatgatttaaagtcagaaaac
aggcatgattaaacaacaattaacaccaggccagacatcatgcagtgagg
cacttgaatggctgaacatcattaagttctcacatataagtatctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_70413296_70414485
seq2: B6Ng01-009K17.b_45_1224 (reverse)

seq1  GTATCACCCTGTGTCCAAGAGTTT-TGAGTACTCT-TCAATTTGGGGAAG  48
      |||||||||||||||||||||||| |||    ||| || ||| | |  ||
seq2  GTATCACCCTGTGTCCAAGAGTTTATGA----TCTCTCCATTCGAGAGAG  46

seq1  AAAAGCTCAAATTTGCTGCCGCTTTCATTCATCCTTGATCTAG-TTCTAT  97
      |||||||| |||| | | |  ||  |||||||||||    ||| ||||| 
seq2  AAAAGCTC-AATTCGGTACGACTAACATTCATCCTTAGAATAGATTCTAA  95

seq1  TTCCTTGAG-GTCTCCCTCCAGGAAAAAGGGTAGGACAGCTACTATATCA  146
      ||||||||| ||||||||||  |||||||||   ||||||| |||| || 
seq2  TTCCTTGAGAGTCTCCCTCCGAGAAAAAGGGATAGACAGCTTCTAT-TC-  143

seq1  TGCCAAGAGAGCAGCCGGCCAGGGCTCTAGGAGTCCTTCTGAGAAAGACA  196
      ||||||||||||||||  | |  ||||||||| ||||| ||||||| |||
seq2  TGCCAAGAGAGCAGCCACCAA--GCTCTAGGAATCCTT-TGAGAAAAACA  190

seq1  GGCTCTGAGCTTGAGGTCTTTGAAAGCGGAGATCAGAGATCAGATGTCCC  246
      ||| |||||| ||||||||||||||||| ||||||||||||||||| |||
seq2  GGC-CTGAGC-TGAGGTCTTTGAAAGCGAAGATCAGAGATCAGATGACCC  238

seq1  TAACGGGCAGGGGTCACCTGATTAAATCGACACTTGTGGGTTAATGAAAC  296
      ||||| ||||||||||||||||||||||||||| |||||| |||||||||
seq2  TAACGAGCAGGGGTCACCTGATTAAATCGACAC-TGTGGG-TAATGAAAC  286

seq1  ATTTGAAGGCAGCTCGGTTGGAGGAAAATTGATCTCAGTCCGTGGGGCCA  346
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATTTGAAGGCAGCTCGGTTGGAGGAAAATTGATCTCAGTCCGTGGAGCCA  336

seq1  AAAGTAGAATCATAACCAAGTAGTCCTCAGAAAGATACAGATTTTGGTTT  396
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAAATCATAACCAAGTAGTCCTCAGAAAGATACAGATTTTGGTTT  386

seq1  TGTTGGCGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  436

seq1  CACAGTATGTGAGGTCACAGGATAACCTCTCTGGTGTCAGTGTTCACCTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTATGTGAGGTCACAGGATAACCTCTCTGGTGTCAGTGTTCACCTT  486

seq1  CCTTGCTTTTATTATTATTTTTATTATTGTTGTTATTGTTGATTAAAACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTTTTATTATTATTTTTATTATTGTTGTTATTGTTGATTAAAACA  536

seq1  TTATTATAAAGAACTGTCTGTCAAATGGAAAAACATACAGCAGAATTAGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATAAAGAACTGTCTGTCAAATGGAAAAACATACAGCAGAATTAGC  586

seq1  CAGGTCCAATGACCTTCCACACAGTTAGAATGGCCATCCCGAAGCTGTGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCAATGACCTTCCACACAGTTAGAATGGCCATCCCGAAGCTGTGT  636

seq1  AACTTCACGTGGATCTTACACCTTCGCTCAACTGTGTTTTCAAGCGCTTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCACGTGGATCTTACACCTTCGCTCAACTGTGTTTTCAAGCGCTTA  686

seq1  TTTCACCAGGTGCCAAAAAGGAAAAAACAAAACAAACAAACAAACAACTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCAGGTGCCAAAAAGGAAAAAACAAAACAAACAAACAAACAACTG  736

seq1  GAAACACAATTTCATTTCCTCTTTCATGACTCAAGCCCTTCACCTGCATC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACAATTTCATTTCCTCTTTCATGACTCAAGCCCTTCACCTGCATC  786

seq1  CCTCCCTTCCTTGTCACTGAACATTTAGCCTTTCCTGGTCTCCTTTCTAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTTCCTTGTCACTGAACATTTAGCCTTTCCTGGTCTCCTTTCTAT  836

seq1  ACGTTGTGCAGCGATCCTATGTACATTCTTTGAATACATACACATCTGTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTGTGCAGCGATCCTATGTACATTCTTTGAATACATACACATCTGTA  886

seq1  CACAGAAGGGGCCTGGGGTCCCCGTATGAGGGAGAACGTGAGGGTTTCTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAGGGGCCTGGGGTCCCCGTATGAGGGAGAACGTGAGGGTTTCTT  936

seq1  TTTTCATTCTGAGCTTGCATGACCTTGCCTAATATCATCTTTTCCAAATC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTCTGAGCTTGCATGACCTTGCCTAATATCATCTTTTCCAAATC  986

seq1  TATTTTCTTGCAAGTTTTGTGATTTCATTTTTCTTTAGAGCTGAATAGTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTTGCAAGTTTTGTGATTTCATTTTTCTTTAGAGCTGAATAGTA  1036

seq1  TTCCACTTGCATGTCAGTACCAGATTTCACTACAGCTTCATCTGCTTAGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTTGCATGTCAGTACCAGATTTCACTACAGCTTCATCTGCTTAGA  1086

seq1  CCACTACGTTAGTTCCATTTCCTCGCTGTAGTAAATAAAGCAGCAATAAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTACGTTAGTTCCATTTCCTCGCTGTAGTAAATAAAGCAGCAATAAA  1136

seq1  GCACCCATGGGGATCAAATACTTCTCAGGTAGAATGTGGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCATGGGGATCAAATACTTCTCAGGTAGAATGTGGAATTC  1180

seq1: chr14_70280388_70281448
seq2: B6Ng01-009K17.g_70_1115

seq1  GAATTCCCAGCCTCACGTTTGTACCAGGCAGAGAGATGTTGAGGCACCCA  50
      ||||| | ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATT-CTAGCCTCACGTTTGTACCAGGCAGAGAGATGTTGAGGCACCCA  49

seq1  GCATTGTGAAATTCTGACTCCTATGTGGTGGCTTTCCCCTCTGCCCTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTGAAATTCTGACTCCTATGTGGTGGCTTTCCCCTCTGCCCTGAT  99

seq1  GCTCCACCAACGGCCATGGGAGACACTGGTAAACTGCTTAGCCTCTACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCACCAACGGCCATGGGAGACACTGGTAAACTGCTTAGCCTCTACTG  149

seq1  GCACAAAGTGAGAGGCAGGCCCAGGACAGGATGTCAAGGGAGGTGAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAGTGAGAGGCAGGCCCAGGACAGGATGTCAAGGGAGGTGAGAAA  199

seq1  TGAAATATCCATTATCACAAAAATCTCTGTGAACAAGAAAGAGGTAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATCCATTATCACAAAAATCTCTGTGAACAAGAAAGAGGTAGGAG  249

seq1  TGGCTGGCTCAGCCCCCAAGAGGTCCATGGAGACAGAATGGAAGGATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGCTCAGCCCCCAAGAGGTCCATGGAGACAGAATGGAAGGATGAC  299

seq1  GAGGGGAGATCAGAGAAGACCCTGCTTAGCCTGAGTGTGAAGCCTCAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAGATCAGAGAAGACCCTGCTTAGCCTGAGTGTGAAGCCTCAGGG  349

seq1  ATGGATTCCATATAATGCAACTCCCAGTTAAAGAAGCCATAGTTGGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTCCATATAATGCAACTCCCAGTTAAAGAAGCCATAGTTGGAAAG  399

seq1  GAGGGGCCACCAGAAGCAAAAGTCAACAATGACTGGCTATCAGTGGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGCCACCAGAAGCAAAAGTCAACAATGACTGGCTATCAGTGGCTGT  449

seq1  TAACTCTAATTCATCATCTCCCTAGGTCAGATCATCACAATTCCACACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTAATTCATCATCTCCCTAGGTCAGATCATCACAATTCCACACTG  499

seq1  AGGCTGGGACAATGGATCTCGGAGCTCTATTCTCTGTTCTTTGGATTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGGACAATGGATCTCGGAGCTCTATTCTCTGTTCTTTGGATTAGC  549

seq1  CTCCAACCTCCTCCAGGCTCCCATGCCACCCTGTATTATCGTAGCCCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACCTCCTCCAGGCTCCCATGCCACCCTGTATTATCGTAGCCCTCA  599

seq1  TACATACTATGTCAAGAAGTGATATGCTGGAAGCATATCCCAAATTCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACTATGTCAAGAAGTGATATGCTGGAAGCATATCCCAAATTCTGG  649

seq1  TACCAGCAGCTTTATGGCAGCTCTCTGCCACACATCACACCTGTCCCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGCAGCTTTATGGCAGCTCTCTGCCACACATCACACCTGTCCCAGG  699

seq1  GAGCAAGAAGCACTAGGAGGCGGTAACCAGGCGCTCAGACAGACAAGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGAAGCACTAGGAGGCGGTAACCAGGCGCTCAGACAGACAAGCTA  749

seq1  GCATGAAGAAAGCCCTGCGGATGTGAGGTTCTATACCACTCAG-TCTAGA  799
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCATGAAGAAAGCCCTGCGGATGTGAGGTTCTATACCACTCAGTTCTAGA  799

seq1  ATGACAGGGAGATGTCATCTCC-CTGAGGAACATGGTAGAGACTGATTCA  848
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATGACAGGGAGATGTCATCTCCTCTGAGGAACATGGTAGAGACTGATTCA  849

seq1  AGCCCGAGACACAGGACAACTTA-TTGAGATAGGAACTAAAGACGAGTTC  897
      ||||||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  AGCCCGAGACACAGGACAACTTATTTGAGATAGGATCTAAAGACGAGTTC  899

seq1  ATTAGCAAACTGGACACTGTAGATAAAAGGGCCAATGAATTTAAAGTCAG  947
      ||||||||| |||| |||||||||||||||||| ||| ||||||||||||
seq2  ATTAGCAAA-TGGA-ACTGTAGATAAAAGGGCC-ATG-ATTTAAAGTCAG  945

seq1  AAAAACAGGCATGATTTAAACAAACAGATATAACAGCCAGGCCAGGACAT  997
       ||||||||||||| |||||| |||| || ||||| |||||||| |||||
seq2  -AAAACAGGCATGA-TTAAAC-AACA-AT-TAACA-CCAGGCCA-GACAT  988

seq1  CCAGGCAGTGAGGCGACATGGAATGGCTGAACATACATATAAGTATCTCA  1047
       || |||||||||| || | |||||||||||||| ||| ||||| |||||
seq2  -CATGCAGTGAGGC-AC-TTGAATGGCTGAACAT-CAT-TAAGT-TCTCA  1032

seq1  CATATAAGTATCTC  1061
      ||||||||||||||
seq2  CATATAAGTATCTC  1046