BAC Information

Click to search

BAC

Clone NameB6Ng01-011I02
Chromosome14 (Build37)
Map Location 70,407,642 - 70,551,107
singlet/doubletdoublet
Overlap gene1700081D17Rik, Egr3, Bin3, 2610301G19Rik
Upstream geneStc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701, LOC668397
Downstream gene9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2, Gfra2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011I02.bB6Ng01-011I02.g
ACCDH846869DH846870
length1,02589
definitionDH846869|Mus musculus domesticus DNA, BAC clone: B6Ng01-011I02, 5' end.DH846870|Mus musculus domesticus DNA, BAC clone: B6Ng01-011I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,550,087 - 70,551,107)(70,407,642 - 70,407,730)
sequence
gaattcccccccttttccctcagaagcgtgagtcctggtggcatgcaggg
tggggtaatctggagggaaggacttgttcctttcatatagatgctcttag
aacagagggggtacttctctacacaggaagaggaggaggaagctggacgg
ggttttagggcttttgagtcaccggccatttcctttcttcagctctgagt
ctcttccagacatcccacacacttcacctgagccacctgaacagatttcc
tgctcggggtcctcatggaaggctggaccagggccgaaggtaagaggatg
aacaggccttacatctccctctaggggcatgggccacctttgatacctgt
tgctactaatatctttttctgtggacactcaagagtctagtcccttttct
ttgaaaggcagacagacacattgaaacatacttaacaaatacagtaactt
tatacactacttctgcaaagctgagatttaatacagtttatatttcaaaa
tgtcacattgacagtttttgttgttttgctcttttgagacagggtctcac
tgtagcgcagcctgacctcatggagagcctcctccctgcctagtgctggg
attattggtgtgttcccacacttacccagctgaaacactttattttcaat
caagtcttatgtagcttaggctggccttgaactcaggatgtagctaagga
tgaccttgaacttctggtcctcttccctccctcctaggtgctggtttaca
ggtgtgcggcatcagaccttccttgcttatgcattcattggttatttatt
tatttatttttttagcttttctggtcttgactttgtgtgcacatgtgcat
gtgttttatgagtttggtatccaggtgtgtgcagagtccaggggggttga
tgcttagtgtcttctgttgtactctgcttgggtttgtttggttttattaa
agtggagtttaccgggggcttgccgtttcgctgtgttgactagttcagca
agttctaaaatatcctcctgcctgc
agtgggttagggacgggaagttttgaagatgcgatcaaggagcttctact
gaccagagcaggagagggtgggagggtaaggaaggagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_70550087_70551107
seq2: B6Ng01-011I02.b_50_1074 (reverse)

seq1  GCAGGCAGGAGGAT-CTCTAGACCTTGCTG-ACCAGTCAACACAGCCGAA  48
      ||||||||||||||  | |||| ||||||| || ||||||||||| ||||
seq2  GCAGGCAGGAGGATATTTTAGAACTTGCTGAACTAGTCAACACAG-CGAA  49

seq1  ACGGCAAGCCCCAGTGAAACTCAACCTCTAATAAAAGCAAACAAAACCCA  98
      |||||||||||| |  |||||| | || |||||||| |||||||| || |
seq2  ACGGCAAGCCCCCGGTAAACTCCA-CTTTAATAAAACCAAACAAACCCAA  98

seq1  GCAGAGTACAACAGAAGACACTTAGCATCAA-CCCCCTGG-CTCTGCACA  146
      |||||||||||||||||||||| |||||||| |||||||| |||||||||
seq2  GCAGAGTACAACAGAAGACACTAAGCATCAACCCCCCTGGACTCTGCACA  148

seq1  CACCTGGATA-CAAACTCATAAAACACATGCACATGTGCACACAAAGTCA  195
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGATACCAAACTCATAAAACACATGCACATGTGCACACAAAGTCA  198

seq1  AGACCAG-AAAGCTAAAAAAATAAATAAATAAATAACCAATGAATGCATA  244
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGAAAAGCTAAAAAAATAAATAAATAAATAACCAATGAATGCATA  248

seq1  AGCAAGGAAGGTCTGATGCCGCACACCTGTAAACCAGCACCTAGGAGGGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGAAGGTCTGATGCCGCACACCTGTAAACCAGCACCTAGGAGGGA  298

seq1  GGGAAGAGGACCAGAAGTTCAAGGTCATCCTTAGCTACATCCTGAGTTCA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAGGACCAGAAGTTCAAGGTCATCCTTAGCTACATCCTGAGTTCA  348

seq1  AGGCCAGCCTAAGCTACATAAGACTTGATTGAAAATAAAGTGTTTCAGCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCCTAAGCTACATAAGACTTGATTGAAAATAAAGTGTTTCAGCT  398

seq1  GGGTAAGTGTGGGAACACACCAATAATCCCAGCACTAGGCAGGGAGGAGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGTGTGGGAACACACCAATAATCCCAGCACTAGGCAGGGAGGAGG  448

seq1  CTCTCCATGAGGTCAGGCTGCGCTACAGTGAGACCCTGTCTCAAAAGAGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCATGAGGTCAGGCTGCGCTACAGTGAGACCCTGTCTCAAAAGAGC  498

seq1  AAAACAACAAAAACTGTCAATGTGACATTTTGAAATATAAACTGTATTAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACAAAAACTGTCAATGTGACATTTTGAAATATAAACTGTATTAA  548

seq1  ATCTCAGCTTTGCAGAAGTAGTGTATAAAGTTACTGTATTTGTTAAGTAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGCTTTGCAGAAGTAGTGTATAAAGTTACTGTATTTGTTAAGTAT  598

seq1  GTTTCAATGTGTCTGTCTGCCTTTCAAAGAAAAGGGACTAGACTCTTGAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAATGTGTCTGTCTGCCTTTCAAAGAAAAGGGACTAGACTCTTGAG  648

seq1  TGTCCACAGAAAAAGATATTAGTAGCAACAGGTATCAAAGGTGGCCCATG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACAGAAAAAGATATTAGTAGCAACAGGTATCAAAGGTGGCCCATG  698

seq1  CCCCTAGAGGGAGATGTAAGGCCTGTTCATCCTCTTACCTTCGGCCCTGG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAGAGGGAGATGTAAGGCCTGTTCATCCTCTTACCTTCGGCCCTGG  748

seq1  TCCAGCCTTCCATGAGGACCCCGAGCAGGAAATCTGTTCAGGTGGCTCAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCTTCCATGAGGACCCCGAGCAGGAAATCTGTTCAGGTGGCTCAG  798

seq1  GTGAAGTGTGTGGGATGTCTGGAAGAGACTCAGAGCTGAAGAAAGGAAAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTGTGTGGGATGTCTGGAAGAGACTCAGAGCTGAAGAAAGGAAAT  848

seq1  GGCCGGTGACTCAAAAGCCCTAAAACCCCGTCCAGCTTCCTCCTCCTCTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGGTGACTCAAAAGCCCTAAAACCCCGTCCAGCTTCCTCCTCCTCTT  898

seq1  CCTGTGTAGAGAAGTACCCCCTCTGTTCTAAGAGCATCTATATGAAAGGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTAGAGAAGTACCCCCTCTGTTCTAAGAGCATCTATATGAAAGGA  948

seq1  ACAAGTCCTTCCCTCCAGATTACCCCACCCTGCATGCCACCAGGACTCAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTCCTTCCCTCCAGATTACCCCACCCTGCATGCCACCAGGACTCAC  998

seq1  GCTTCTGAGGGAAAAGGGGGGGAATTC  1021
      |||||||||||||||||||||||||||
seq2  GCTTCTGAGGGAAAAGGGGGGGAATTC  1025

seq1: chr14_70407642_70407730
seq2: B6Ng01-011I02.g_72_160

seq1  AGTGGGTTAGGGACGGGAAGTTTTGAAGATGCGATCAAGGAGCTTCTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTTAGGGACGGGAAGTTTTGAAGATGCGATCAAGGAGCTTCTACT  50

seq1  GACCAGAGCAGGAGAGGGTGGGAGGGTAAGGAAGGAGAG  89
      |||||||||||||||||||||||||||||||||||||||
seq2  GACCAGAGCAGGAGAGGGTGGGAGGGTAAGGAAGGAGAG  89