BAC Information

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BAC

Clone NameB6Ng01-012J18
Chromosome14 (Build37)
Map Location 10,071,088 - 10,072,236
singlet/doubletsinglet
Overlap genenone
Upstream geneAcox2, BC055107, Oit1, LOC667005, 4930452B06Rik, LOC100041948
Downstream geneFhit, LOC100042415
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012J18.bB6Ng01-012J18.g
ACCDH847657DH847658
length1,2421,127
definitionDH847657|Mus musculus domesticus DNA, BAC clone: B6Ng01-012J18, 5' end.DH847658|Mus musculus domesticus DNA, BAC clone: B6Ng01-012J18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatcagaccttcaaataacaaccaataccaatactcctcaaact
attccacaaaatagaaacggaaggtactctacccaatttgctctatgaag
ccacaattactctgatacctaaaccacacaaagacccaacaaagaaagag
acattcagaccaatttcccttatgaatatcgatgcaaaaatactcaataa
aattctcccaaaccgaatccaagaacacatcaaaaccatcgtccattatg
atcaaataggcttcatcccagggatgcagaggttattcaacatacggaaa
tccatcaatgtaattcactatattaataaactcaaaaaaaccccacatga
tcatctcattagatgctgagaaagcatttgacaaaatccaacacccgttt
atgataaaagtcttggaaagatcagaaattcaaggcccatccctaaacat
aataaatgcaatatacagtaaaccaatagccaacatcaaacgaaatggaa
agaaggtggaagcaatctcactaaaatcagggactagacaaggctgccca
atttctccgtacctattcaatatagtacttgaagtcctagtgagagcaat
tagataacaaaaggagaccaaagggatacaaattgtaatggaagaagtca
aaatgtcactttttgcagatgatatgatagtatacataagtgaccccaaa
aattccaccacagaacttctaaacctgatgaacaacttcagtgaaatgtc
tggatatataattaactcaaacaaatcagtggtctttctctacacaaagg
ataaacaggctgagaaagaaagtagggaaacaacacccttcacaatagtc
acaaataacataaaatactttggtgagactctaactaagcaagtgaaaga
tctgtatgataagaacttcaagtctttgaagaaagaaatcgaagaagatc
tcagaagatggaaagatctctatgtttatggattggcaggattaatattg
tcaaaatggctatctctgaaagcaatctacagatttgatgcaattcccat
caaaattcaaatcaattctcaccaagtagaaagggcaatttgcatatttt
attctggaaaaacaagacgtagaatagcgaactatctcagcaataaagaa
cctctagtgatcccatctctgaaccagcttgctcagaacagtgtataaag
tgcagtccacttgtacaggtcagcgagaccagggggagattc
gaattcagaagcccatccctcatccaataagaaatgccatcttcaaatat
cactgtttgtaccaatatgctgggagtcttggacaagctatgtcatttgg
agtacttcctactactatgagaacactcctgttaagaacagctgtcacaa
ggaaaaagacatgactcaccccaacacaaatcagcatgtgtgggtcaatt
cctttggtccttgagacatgatgatttcattgaataggtatctaccaata
tatgctatttggtgttgctgcacatacacaagtttgcacctggacaagtg
tttatgagaatttgtttcaaggaggctagagatatggatcagcagttaag
agtacttgctgtccttgcaaaggacctgatctcaattcctagtacccatg
tcaggtgactcacaagcacctataactccagttccaggtgatctgaattc
catctcctggtctctgctggcacctgcatatgcccagcacacacacatga
acatacaaaatagttaaatgattattttttttaaagagagaatatgttcc
tgggttagtgaatattcttgtaatcctatcctcttccccatgctctcgac
tcttttcagggtttggaaatgttataatatattaagtttcttagcttcat
tcatttggaagcatttcatattctgtgcacgcacacagagagggcatcct
gaagccagttccctacagtgttaagattgaagagcctagctcaccggtag
gcaattttctgaccttctgcattgctcctgcaccttcccactgggacagt
agcatttagattcacttttgtagaagatcctaacagggtatgtggggaac
aggcctgctaatgggatgaaatttgagacgtttccagatattctttccac
agcactgagctatagcagcttaaatgacccactttacaaataactctgga
ccttgctcttggagtcaagtgcagagggagagtactgcttcctcagtgga
gcataaaggcccacgtagcaaggagagtgtcaggaaggagaagggaatat
tcagttcatgagattcaagacgactcgtgaattgtaatgaatggtttcaa
tgtgccatcattgactgaaacccttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_10071088_10072236
seq2: B6Ng01-012J18.g_66_1192 (reverse)

seq1  TCAAGGGTTTTTCAAGTTCCATGATGCCACATTTTGAAACCATTTCATTT  50
      |||||||  |||||   || |||||| ||||  ||||||||| ||||  |
seq2  TCAAGGG--TTTCA--GTCAATGATGGCACA--TTGAAACCA-TTCA--T  41

seq1  TACCAAACTCACGAAGTCGTTCTTTGAATCTTTCATTTGAACTGAATATT  100
      |||  || ||||| ||||||   |||||||  |||  |||||||||||||
seq2  TAC--AATTCACG-AGTCGT--CTTGAATC--TCA--TGAACTGAATATT  82

seq1  TCCTTTCTCTTCCTGGCAACTCTCCTTTGCTACGTGGGCCTTAATGCT-C  149
       ||||   ||||||| | ||||||| |||||||||||||||| ||||| |
seq2  CCCTTCTCCTTCCTGAC-ACTCTCC-TTGCTACGTGGGCCTTTATGCTCC  130

seq1  ACTGGGGAAGCAGTACTCTCCCTTCTGCACTTGACTCCAAGAGCAAGGTT  199
      |||| ||||||||||||||||| ||||||||||||||||||||||||| |
seq2  ACTGAGGAAGCAGTACTCTCCC-TCTGCACTTGACTCCAAGAGCAAGG-T  178

seq1  CCAGAGTTATTTGTAAAAGTGGGTCATTTAAGCTGCTTATAGCTCAGTGC  249
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  CCAGAGTTATTTGT-AAAGTGGGTCATTTAAGCTGC-TATAGCTCAGTGC  226

seq1  TGTGGAAAGAATATCTGGAAACGTCTCAAATTTCATCCCATTAGCAGGCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAAGAATATCTGGAAACGTCTCAAATTTCATCCCATTAGCAGGCC  276

seq1  TGTTCCCCACATACCCTGTTAGGATCTTCTAC-AAAGTGAATCTAAATGC  348
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGTTCCCCACATACCCTGTTAGGATCTTCTACAAAAGTGAATCTAAATGC  326

seq1  TACTGTCCCAGTGGGAAGGTGCAGGAGCAATGCAGAAGGTCAGAAAATTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCCCAGTGGGAAGGTGCAGGAGCAATGCAGAAGGTCAGAAAATTG  376

seq1  CCTACCGGTGAGCTAGGCTCTTCAATCTTAACACTGTAGGGAACTGGCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCGGTGAGCTAGGCTCTTCAATCTTAACACTGTAGGGAACTGGCTT  426

seq1  CAGGATGCCCTCTCTGTGTGCGTGCACAGAATATGAAATGCTTCCAAATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGCCCTCTCTGTGTGCGTGCACAGAATATGAAATGCTTCCAAATG  476

seq1  AATGAAGCTAAGAAACTTAATATATTATAACATTTCCAAACCCTGAAAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGCTAAGAAACTTAATATATTATAACATTTCCAAACCCTGAAAAG  526

seq1  AGTCGAGAGCATGGGGAAGAGGATAGGATTACAAGAATATTCACTAACCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGAGAGCATGGGGAAGAGGATAGGATTACAAGAATATTCACTAACCC  576

seq1  AGGAACATATTCTCTCTTTAAAAAAAATAATCATTTAACTATTTTGTATG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACATATTCTCTCTTTAAAAAAAATAATCATTTAACTATTTTGTATG  626

seq1  TTCATGTGTGTGTGCTGGGCATATGCAGGTGCCAGCAGAGACCAGGAGAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTGTGTGTGCTGGGCATATGCAGGTGCCAGCAGAGACCAGGAGAT  676

seq1  GGAATTCAGATCACCTGGAACTGGAGTTATAGGTGCTTGTGAGTCACCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCAGATCACCTGGAACTGGAGTTATAGGTGCTTGTGAGTCACCTG  726

seq1  ACATGGGTACTAGGAATTGAGATCAGGTCCTTTGCAAGGACAGCAAGTAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGTACTAGGAATTGAGATCAGGTCCTTTGCAAGGACAGCAAGTAC  776

seq1  TCTTAACTGCTGATCCATATCTCTAGCCTCCTTGAAACAAATTCTCATAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACTGCTGATCCATATCTCTAGCCTCCTTGAAACAAATTCTCATAA  826

seq1  ACACTTGTCCAGGTGCAAACTTGTGTATGTGCAGCAACACCAAATAGCAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGTCCAGGTGCAAACTTGTGTATGTGCAGCAACACCAAATAGCAT  876

seq1  ATATTGGTAGATACCTATTCAATGAAATCATCATGTCTCAAGGACCAAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGTAGATACCTATTCAATGAAATCATCATGTCTCAAGGACCAAAG  926

seq1  GAATTGACCCACACATGCTGATTTGTGTTGGGGTGAGTCATGTCTTTTTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGACCCACACATGCTGATTTGTGTTGGGGTGAGTCATGTCTTTTTC  976

seq1  CTTGTGACAGCTGTTCTTAACAGGAGTGTTCTCATAGTAGTAGGAAGTAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGACAGCTGTTCTTAACAGGAGTGTTCTCATAGTAGTAGGAAGTAC  1026

seq1  TCCAAATGACATAGCTTGTCCAAGACTCCCAGCATATTGGTACAAACAGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATGACATAGCTTGTCCAAGACTCCCAGCATATTGGTACAAACAGT  1076

seq1  GATATTTGAAGATGGCATTTCTTATTGGATGAGGGATGGGCTTCTGAATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTGAAGATGGCATTTCTTATTGGATGAGGGATGGGCTTCTGAATT  1126

seq1  C  1149
      |
seq2  C  1127