BAC Information

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BAC

Clone NameB6Ng01-012P13
Chromosome14 (Build37)
Map Location 117,499,552 - 117,643,590
singlet/doubletdoublet
Overlap geneGpc6
Upstream geneGpc5
Downstream gene5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012P13.bB6Ng01-012P13.g
ACCDH847911DH847912
length1,1411,115
definitionDH847911|Mus musculus domesticus DNA, BAC clone: B6Ng01-012P13, 5' end.DH847912|Mus musculus domesticus DNA, BAC clone: B6Ng01-012P13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,642,431 - 117,643,590)(117,499,552 - 117,500,682)
sequence
gaattcttaaatctgccctaacatcaccattcagagactctcaagaattt
acagtgagtgtatcccatgttcgtaatcatcctgcctggtgtccccactg
cttgagctataacactaacttgagatacttaaattttgggaaacatataa
tctacagtgtatgggaggaggacacagcttccagcatggaagcactacat
tcccaataactagagaccactttccaagtggagcatcctcatctcaagtg
gctaaagtcaaggtagattgactccaagattgacttaccacctttgggga
ccctaggggaccctagagggagggcaagctagcacaagaaagaagagaac
tgttggcaatctgcctgctctcaggataccttcttttacatcccttcaca
gaatttagcccgacacaatggtgaagacttgtaattggatcgtttatgct
tctagccagattgctacactgagatacacactgagcacattacgatagtc
tcccacatggaaggctgtctagatcctaggcccaagtctgaatcactctg
ggtggaagcccagatgagtacaagagcagccaggtatggcaggaacatct
aagaatggtcttaccgaaggccaggaaggccaagagagcactggcttcat
tcagttccttgttatctctagtaacctgagagcatgctccaaacagttgg
attctgattgggccagttggactggccagtttcccttccttcctctgcct
caccctaatttctgtcttaagtcttttaacaagttcccaggcaagcagtg
taatggtacctcaacctcagctacacactctgaccatacagaatcacggc
cagctcttggccaccatgtcagctcctagctcttaagatcccacacatta
atctgtagaaagcttctcgataaaccttaccctctgtggtctgctggact
tcattcttgagccttgcatgacagaatccagagaccacggaacgtttgtg
tgactgtcagcatctcacaacaatagtctcgataaagtcccctcagtcag
agcaaaggtttcatcaaattcagagtcaccacacatcactgacgatgaat
caagcaaattcattggaatgcaagcttctacagccaatgag
gaattctttcttctgaactatgatttaaaatgagtctgaatggttaaaca
ggcaatcatccaggaaatgtatgctattctttacttcaatgtatatagag
ccagaaatattctttcataacaaggatggaagagaaaaagaatcagataa
aactcagttgtcaatcaacataaggaagagtatcttttgctcagatttct
tacttatttccttcttccttctttacttttggcttctacggtgactattt
atttgatttttcaaatttggttacacaaattatatccagcttctaaaatt
agtagcctagtgtcaccttgctgtggtgaaggcttggctaccttgccttt
ccgttagtttggaatgcatatttataattttctcacagcccctttcagtc
agtaatgttcactgtgttatcagactgcccattctgcgtatcccagccca
cactctctccatctacttcttggttatggaaagtctacctggtacctggc
tgacttcatgtgtgagcacatcattgtttgacttcttgaggattcattca
gaaataccaccatcacaaattattttacagcgactctgggtaagaggtca
tcggtagcttctagaatcatcaattaaactagaataggcttctgcagcca
agtaggatttttacgacccattaaaaaccacattttgtacacatgaagaa
gtttcagaaatggctgttcatgggagtaattagatataacaggatgacta
caatccagtttttctatctccacaaatatatttttgatctaaccgagaat
gcaatttttttgctgaagtagaattttactaaaatatgatacttcctctt
gtcattttgtagatgtttattttctcttaaaacacctttatctaatgagt
gttgtccagatgcatacattgccccagcttcaccttttagtctattgcta
atcatttttgtttgtttgtttgttttggtttgatttcatacaatgtttct
tctatgtagtctggctgtcagaactgcttgtagtctaggctgcctttggt
gctcataatgcagtactctcttcccaaaatctcacccacaatctctagct
agtatcatttgataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_117642431_117643590
seq2: B6Ng01-012P13.b_49_1189 (reverse)

seq1  CTCATTGCCTGGTAGAAGCCTTTGCATTCCAATTGGAAATTTTTCCCTGA  50
      ||||||| || ||||||||  ||||||||||||  |||   ||| | |||
seq2  CTCATTGGCT-GTAGAAGC--TTGCATTCCAAT--GAA---TTTGCTTGA  42

seq1  ATCCATTTGGTCAGTGGAATGTGTGGTGACTCTGAATTTGATGGAAACCT  100
       ||    | |||||||  |||||||||||||||||||||||| |||||||
seq2  TTC---ATCGTCAGTG--ATGTGTGGTGACTCTGAATTTGAT-GAAACCT  86

seq1  TTGCTCTTGACTGAGGGGACCTTTAATTCGGAGACTATTG-TGTGAGATG  149
      |||||| |||||||||||| |||||  || |||||||||| |||||||||
seq2  TTGCTC-TGACTGAGGGGA-CTTTA--TC-GAGACTATTGTTGTGAGATG  131

seq1  CTGACAGTCACACAAACGTTCCGTGGTCTCTGGATTCTGTTCATGCAAGG  199
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTGACAGTCACACAAACGTTCCGTGGTCTCTGGATTCTG-TCATGCAAGG  180

seq1  CTCAAGAATGAAGTCCAGCAGACCACAGAGGGTAAGGTTTATCGAGAAGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAATGAAGTCCAGCAGACCACAGAGGGTAAGGTTTATCGAGAAGC  230

seq1  TTTCTACAGATTAATGTGTGGGATCTTAAGAGCTAGGAGCTGACATGGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACAGATTAATGTGTGGGATCTTAAGAGCTAGGAGCTGACATGGTG  280

seq1  GCCAAGAGCTGGCCGTGATTCTGTATGGTCAGAGTGTGTAGCTGAGGTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGAGCTGGCCGTGATTCTGTATGGTCAGAGTGTGTAGCTGAGGTTG  330

seq1  AGGTACCATTACACTGCTTGCCTGGGAACTTGTTAAAAGACTTAAGACAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACCATTACACTGCTTGCCTGGGAACTTGTTAAAAGACTTAAGACAG  380

seq1  AAATTAGGGTGAGGCAGAGGAAGGAAGGGAAACTGGCCAGTCCAACTGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGGGTGAGGCAGAGGAAGGAAGGGAAACTGGCCAGTCCAACTGGC  430

seq1  CCAATCAGAATCCAACTGTTTGGAGCATGCTCTCAGGTTACTAGAGATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCAGAATCCAACTGTTTGGAGCATGCTCTCAGGTTACTAGAGATAA  480

seq1  CAAGGAACTGAATGAAGCCAGTGCTCTCTTGGCCTTCCTGGCCTTCGGTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAACTGAATGAAGCCAGTGCTCTCTTGGCCTTCCTGGCCTTCGGTA  530

seq1  AGACCATTCTTAGATGTTCCTGCCATACCTGGCTGCTCTTGTACTCATCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATTCTTAGATGTTCCTGCCATACCTGGCTGCTCTTGTACTCATCT  580

seq1  GGGCTTCCACCCAGAGTGATTCAGACTTGGGCCTAGGATCTAGACAGCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCCACCCAGAGTGATTCAGACTTGGGCCTAGGATCTAGACAGCCT  630

seq1  TCCATGTGGGAGACTATCGTAATGTGCTCAGTGTGTATCTCAGTGTAGCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTGGGAGACTATCGTAATGTGCTCAGTGTGTATCTCAGTGTAGCA  680

seq1  ATCTGGCTAGAAGCATAAACGATCCAATTACAAGTCTTCACCATTGTGTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCTAGAAGCATAAACGATCCAATTACAAGTCTTCACCATTGTGTC  730

seq1  GGGCTAAATTCTGTGAAGGGATGTAAAAGAAGGTATCCTGAGAGCAGGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAAATTCTGTGAAGGGATGTAAAAGAAGGTATCCTGAGAGCAGGCA  780

seq1  GATTGCCAACAGTTCTCTTCTTTCTTGTGCTAGCTTGCCCTCCCTCTAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCAACAGTTCTCTTCTTTCTTGTGCTAGCTTGCCCTCCCTCTAGG  830

seq1  GTCCCCTAGGGTCCCCAAAGGTGGTAAGTCAATCTTGGAGTCAATCTACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTAGGGTCCCCAAAGGTGGTAAGTCAATCTTGGAGTCAATCTACC  880

seq1  TTGACTTTAGCCACTTGAGATGAGGATGCTCCACTTGGAAAGTGGTCTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTTAGCCACTTGAGATGAGGATGCTCCACTTGGAAAGTGGTCTCT  930

seq1  AGTTATTGGGAATGTAGTGCTTCCATGCTGGAAGCTGTGTCCTCCTCCCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTGGGAATGTAGTGCTTCCATGCTGGAAGCTGTGTCCTCCTCCCA  980

seq1  TACACTGTAGATTATATGTTTCCCAAAATTTAAGTATCTCAAGTTAGTGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGTAGATTATATGTTTCCCAAAATTTAAGTATCTCAAGTTAGTGT  1030

seq1  TATAGCTCAAGCAGTGGGGACACCAGGCAGGATGATTACGAACATGGGAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCTCAAGCAGTGGGGACACCAGGCAGGATGATTACGAACATGGGAT  1080

seq1  ACACTCACTGTAAATTCTTGAGAGTCTCTGAATGGTGATGTTAGGGCAGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCACTGTAAATTCTTGAGAGTCTCTGAATGGTGATGTTAGGGCAGA  1130

seq1  TTTAAGAATTC  1160
      |||||||||||
seq2  TTTAAGAATTC  1141

seq1: chr14_117499552_117500682
seq2: B6Ng01-012P13.g_67_1181

seq1  GAATTCTTTCTTCTGAACTATGATTTAAAATGAGTCTGAATGGTTAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTCTGAACTATGATTTAAAATGAGTCTGAATGGTTAAACA  50

seq1  GGCAATCATCCAGGAAATGTATGCTATTCTTTACTTCAATGTATATAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATCATCCAGGAAATGTATGCTATTCTTTACTTCAATGTATATAGAG  100

seq1  CCAGAAATATTCTTTCATAACAAGGATGGAAGAGAAAAAGAATCAGATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATATTCTTTCATAACAAGGATGGAAGAGAAAAAGAATCAGATAA  150

seq1  AACTCAGTTGTCAATCAACATAAGGAAGAGTATCTTTTGCTCAGATTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGTTGTCAATCAACATAAGGAAGAGTATCTTTTGCTCAGATTTCT  200

seq1  TACTTATTTCCTTCTTCCTTCTTTACTTTTGGCTTCTACGGTGACTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATTTCCTTCTTCCTTCTTTACTTTTGGCTTCTACGGTGACTATTT  250

seq1  ATTTGATTTTTCAAATTTGGTTACACAAATTATATCCAGCTTCTAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATTTTTCAAATTTGGTTACACAAATTATATCCAGCTTCTAAAATT  300

seq1  AGTAGCCTAGTGTCACCTTGCTGTGGTGAAGGCTTGGCTACCTTGCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCCTAGTGTCACCTTGCTGTGGTGAAGGCTTGGCTACCTTGCCTTT  350

seq1  CCGTTAGTTTGGAATGCATATTTATAATTTTCTCACAGCCCCTTTCAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTAGTTTGGAATGCATATTTATAATTTTCTCACAGCCCCTTTCAGTC  400

seq1  AGTAATGTTCACTGTGTTATCAGACTGCCCATTCTGCGTATCCCAGCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGTTCACTGTGTTATCAGACTGCCCATTCTGCGTATCCCAGCCCA  450

seq1  CACTCTCTCCATCTACTTCTTGGTTATGGAAAGTCTACCTGGTACCTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCTCCATCTACTTCTTGGTTATGGAAAGTCTACCTGGTACCTGGC  500

seq1  TGACTTCATGTGTGAGCACATCATTGTTTGACTTCTTGAGGATTCATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCATGTGTGAGCACATCATTGTTTGACTTCTTGAGGATTCATTCA  550

seq1  GAAATACCACCATCACAAATTATTTTACAGCGACTCTGGGTAAGAGGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACCACCATCACAAATTATTTTACAGCGACTCTGGGTAAGAGGTCA  600

seq1  TCGGTAGCTTCTAGAATCATCAATTAAACTAGAATAGGCTTCTGCAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTAGCTTCTAGAATCATCAATTAAACTAGAATAGGCTTCTGCAGCCA  650

seq1  AGTAGGATTTTTACGACCCATTAAAAACCACATTTTGTACACATGAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGATTTTTACGACCCATTAAAAACCACATTTTGTACACATGAAGAA  700

seq1  GTTTCAGAAATGGCTGTTCATGGGAGTAATTAGATATAACAGGATGACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGAAATGGCTGTTCATGGGAGTAATTAGATATAACAGGATGACTA  750

seq1  CAATCCAGTTTTTCTATCTCCACAAATATATTTTTGATCTAACCGAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCAGTTTTTCTATCTCCACAAATATATTTTTGATCTAACCGAGAAT  800

seq1  GCAATTTTTTTGCTGAAGTAGAATTTTACTAAAATATGATACTTCCTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTTTTTGCTGAAGTAGAATTTTACTAAAATATGATACTTCCTCTT  850

seq1  GTCATTTTGTAGATGTTTATTTTCTCTTAAAACACCTTTATCTAATGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTTGTAGATGTTTATTTTCTCTTAAAACACCTTTATCTAATGAGT  900

seq1  GTTTGTCCAGATGCATACATTGCCCCAGCTTCACCTTTTAGTCTATTGCT  950
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-TTGTCCAGATGCATACATTGCCCCAGCTTCACCTTTTAGTCTATTGCT  949

seq1  AATCAATTTTTTGTTTGTTTGTTTGTTTTGGTTTGATTTTCAATACAATG  1000
      |||||  ||||||||||||||||||||||||||||||||   ||||||||
seq2  AATCA--TTTTTGTTTGTTTGTTTGTTTTGGTTTGATTT--CATACAATG  995

seq1  TTTC-TCTATGTAGTCTTGGCTGTCCAAGAACTTGCTTTGTAGCCCAGGC  1049
      |||| ||||||||||| ||||||||  ||||| ||| |||||| | ||||
seq2  TTTCTTCTATGTAGTC-TGGCTGTC--AGAAC-TGC-TTGTAGTCTAGGC  1040

seq1  TGGCCTT-GTGCTCAATAAATGCAGGTACTTCTTCTTCCCAAAATCTCAC  1098
      || | || |||||||   |||||| |||||   |||||||||||||||||
seq2  TGCCTTTGGTGCTCA--TAATGCA-GTACT--CTCTTCCCAAAATCTCAC  1085

seq1  CCACCATCTCCTAGCTAGTAATCAATTTGATAA  1131
      |||| |||| ||||||||| ||| |||||||||
seq2  CCACAATCT-CTAGCTAGT-ATC-ATTTGATAA  1115