BAC Information

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BAC

Clone NameB6Ng01-013O06
Chromosome14 (Build37)
Map Location 42,865,111 - 43,021,188
singlet/doubletdoublet
Overlap geneLOC666233, LOC674032, EG666239, LOC100040759, LOC100040771, EG666253
Upstream geneDydc2, EG622782, Dydc1, Mat1a, Sftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726, LOC666228, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910
Downstream geneEG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863, LOC100040875, LOC100040890, LOC100042055, LOC635209, 1700091H14Rik, EG666415, LOC100040976, LOC100040983, LOC100042114, LOC666370, EG666376, LOC100041025, EG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013O06.bB6Ng01-013O06.g
ACCDH848591DH848592
length980859
definitionDH848591|Mus musculus domesticus DNA, BAC clone: B6Ng01-013O06, 5' end.DH848592|Mus musculus domesticus DNA, BAC clone: B6Ng01-013O06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,020,207 - 43,021,188)(42,865,111 - 42,865,846)
sequence
gaattcaggctatgtcctggactaccctcatgcagtggctgccacattct
gcctcctatatactgagagcttctggtgcttattaaactaagtatcctga
tgccaggacaacacaggttgggaatccttagttagagatcaagggcttca
agacctccctcataggcctggaaggaatcccttctaaaatgttcccagga
agtctgtgccacagggtgtggcccacctcaaccctgttaccacatttttt
tcttcagaacacagattctcagttgtaggttcttattgctacacagctac
ccagagcaaaaaaaaaaaataagtatttgcagggaggagactcaatatca
ggatggctatatataatcctcatgggatttcaatgtgccatcaaggtgaa
catatagacaaagagcagtgctgactaaggtgggattccctgcgcatgga
gacagcatcaccttgcaacaggccccactgtagactccagattccaagga
tgcatagacccatgggggacataagcacatatacacacacagacatacac
acacacacagacacacacacaggcacacacacacacaattggtcctctat
gaggagtccatgtctgtaggcttttgctacactgcatccttggtgtattg
ctttaaggtccatggatgtctgatagcaaaaatcaagaaaagaatatacc
cctggacatatttcaagttctgagacatttactactttcatcttagacac
aggcaatcacagcttggtggtgctaagcactagggaatccaggacttact
tgcatcacatcagatactagctgacattgccctccaagcacagcatggct
ggctagcttatgccatccagagccagtaggactgcagtatgtgctgaggt
acctgactagccacagggttgggaacaatatcctatcttgagaacagctg
ccctgatttaggccaagaagtgggaggaag
gaattccaggaagcaagaatacctgtcctgagctggtaaaactttaaagc
tatttttaataacaggaattacagagggctcaagacagaacaaagtgttt
gcttttctgactttcatgagcctaaggggctgtctgaggcagccctattc
ttacacttcaccatacatatggcccttcggcttgggacagtctcaactcc
aaagaactcaatctttctttcttttttatttatttatttttttttatttc
cattttttattaggtatttagatcatttacatttccaatgctataccaaa
agtcccccatacccacccacacccactcccctacccacccactccctctc
tttggccctggcgttcctctgtactggggcatataaagtttgcgtgtcca
atgggcctctctttccagtgatggccgactaggccatcttttgatacata
tgcagctagagtcaagagctccggggtactggttagttcataatgttgtt
ccatctatagggttgcagatccctttagctccttggctactttctctagc
tcctccattgggagccctgtgatccatccattagctgactgtgagcatct
acttctgtgtttgctaggccccggcatagtctcacaagagacagctacat
ctgggtcctttcaataaaatcttgctagtgtatgcaatggtgtcagcgtt
tggatgctgattatgaggtggatccctggatatggaagtctctacatggt
ccatcctttcatctcacctccaaactttgtctctgtaactccttccatgg
gtgtttgttcccaattctaaggaggggcatagtgtccacacttcagtctt
cattcttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_43020207_43021188
seq2: B6Ng01-013O06.b_47_1026 (reverse)

seq1  CTCCCTCCCACTTCTTGGCCTAAAATCAGGGCAGCTGTTCTCAAGATAGG  50
      || |||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTTCCTCCCACTTCTTGGCCT-AAATCAGGGCAGCTGTTCTCAAGATAGG  49

seq1  ATATTGTTCCCAACCCCTGTGGCTAGTCAGGTACCTCAGCACATACTGCA  100
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATATTGTTCCCAA-CCCTGTGGCTAGTCAGGTACCTCAGCACATACTGCA  98

seq1  GTCCTACTGGCTCTGGATGGCATAAGCTAGCCAGCCATGCTGTGCTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTACTGGCTCTGGATGGCATAAGCTAGCCAGCCATGCTGTGCTTGGA  148

seq1  GGGCAATGTCAGCTAGTATCTGATGTGATGCAAGTAAGTCCTGGATTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAATGTCAGCTAGTATCTGATGTGATGCAAGTAAGTCCTGGATTCCC  198

seq1  TAGTGCTTAGCACCACCAAGCTGTGATTGCCTGTGTCTAAGATGAAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTTAGCACCACCAAGCTGTGATTGCCTGTGTCTAAGATGAAAGTA  248

seq1  GTAAATGTCTCAGAACTTGAAATATGTCCAGGGGTATATTCTTTTCTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGTCTCAGAACTTGAAATATGTCCAGGGGTATATTCTTTTCTTGA  298

seq1  TTTTTGCTATCAGACATCCATGGACCTTAAAGCAATACACCAAGGATGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTATCAGACATCCATGGACCTTAAAGCAATACACCAAGGATGCA  348

seq1  GTGTAGCAAAAGCCTACAGACATGGACTCCTCATAGAGGACCAATTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCAAAAGCCTACAGACATGGACTCCTCATAGAGGACCAATTGTGT  398

seq1  GTGTGTGTGCCTGTGTGTGTGTCTGTGTGTGTGTGTATGTCTGTGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGCCTGTGTGTGTGTCTGTGTGTGTGTGTATGTCTGTGTGTGT  448

seq1  ATATGTGCTTATGTCCCCCATGGGTCTATGCATCCTTGGAATCTGGAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGCTTATGTCCCCCATGGGTCTATGCATCCTTGGAATCTGGAGTC  498

seq1  TACAGTGGGGCCTGTTGCAAGGTGATGCTGTCTCCATGCGCAGGGAATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGGGGCCTGTTGCAAGGTGATGCTGTCTCCATGCGCAGGGAATCC  548

seq1  CACCTTAGTCAGCACTGCTCTTTGTCTATATGTTCACCTTGATGGCACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTAGTCAGCACTGCTCTTTGTCTATATGTTCACCTTGATGGCACAT  598

seq1  TGAAATCCCATGAGGATTATATATAGCCATCCTGATATTGAGTCTCCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCCCATGAGGATTATATATAGCCATCCTGATATTGAGTCTCCTCC  648

seq1  CTGCAAATACTTATTTTTTTTTTTTGCTCTGGGTAGCTGTGTAGCAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAATACTTATTTTTTTTTTTTGCTCTGGGTAGCTGTGTAGCAATAA  698

seq1  GAACCTACAACTGAGAATCTGTGTTCTGAAGAAAAAAATGTGGTAACAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTACAACTGAGAATCTGTGTTCTGAAGAAAAAAATGTGGTAACAGG  748

seq1  GTTGAGGTGGGCCACACCCTGTGGCACAGACTTCCTGGGAACATTTTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGGTGGGCCACACCCTGTGGCACAGACTTCCTGGGAACATTTTAGA  798

seq1  AGGGATTCCTTCCAGGCCTATGAGGGAGGTCTTGAAGCCCTTGATCTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTCCTTCCAGGCCTATGAGGGAGGTCTTGAAGCCCTTGATCTCTA  848

seq1  ACTAAGGATTCCCAACCTGTGTTGTCCTGGCATCAGGATACTTAGTTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGATTCCCAACCTGTGTTGTCCTGGCATCAGGATACTTAGTTTAA  898

seq1  TAAGCACCAGAAGCTCTCAGTATATAGGAGGCAGAATGTGGCAGCCACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACCAGAAGCTCTCAGTATATAGGAGGCAGAATGTGGCAGCCACTG  948

seq1  CATGAGGGTAGTCCAGGACATAGCCTGAATTC  982
      ||||||||||||||||||||||||||||||||
seq2  CATGAGGGTAGTCCAGGACATAGCCTGAATTC  980

seq1: chr14_42865111_42865846
seq2: B6Ng01-013O06.g_68_803

seq1  GAATTCCAGGAAGCAAGAATACCTGTCCTGAGCTGGTAAAACTTTAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAAGCAAGAATACCTGTCCTGAGCTGGTAAAACTTTAAAGC  50

seq1  TATTTTTAATAACAGGAATTACAGAGGGCTCAAGACAGAACAAAGTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAATAACAGGAATTACAGAGGGCTCAAGACAGAACAAAGTGTTT  100

seq1  GCTTTTCTGACTTTCATGAGCCTAAGGGGCTGTCTGAGGCAGCCCTATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCTGACTTTCATGAGCCTAAGGGGCTGTCTGAGGCAGCCCTATTC  150

seq1  TTACACTTCACCATACATATGGCCCTTCGGCTTGGGACAGTCTCAACTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTTCACCATACATATGGCCCTTCGGCTTGGGACAGTCTCAACTCC  200

seq1  AAAGAACTCAATCTTTCTTTCTTTTTTATTTATTTATTTTTTTTTATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTCAATCTTTCTTTCTTTTTTATTTATTTATTTTTTTTTATTTC  250

seq1  CATTTTTTATTAGGTATTTAGATCATTTACATTTCCAATGCTATACCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTATTAGGTATTTAGATCATTTACATTTCCAATGCTATACCAAA  300

seq1  AGTCCCCCATACCCACCCACACCCACTCCCCTACCCACCCACTCCCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCCCATACCCACCCACACCCACTCCCCTACCCACCCACTCCCTCTC  350

seq1  TTTGGCCCTGGCGTTCCTCTGTACTGGGGCATATAAAGTTTGCGTGTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCCTGGCGTTCCTCTGTACTGGGGCATATAAAGTTTGCGTGTCCA  400

seq1  ATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATA  450

seq1  TGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTT  500

seq1  CCATCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGCTACTTTCTCTAGC  550

seq1  TCCTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCATCT  600

seq1  ACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAGACAGCTACAT  650

seq1  CTGGGTCCTTTCAATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCCTTTCAATAAAATCTTGCTAGTGTATGCAATGGTGTCAGCGTT  700

seq1  TGGATGCTGATTATGAGGTGGATCCCTGGATATGGA  736
      ||||||||||||||||||||||||||||||||||||
seq2  TGGATGCTGATTATGAGGTGGATCCCTGGATATGGA  736